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RNF157 (ring finger protein 157)

Identity

Alias_symbol (synonym)KIAA1917
Other alias-
HGNC (Hugo) RNF157
LocusID (NCBI) 114804
Atlas_Id 47156
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74138534 and ends at 74236390 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RNF157 (17q25.1) / RNF157 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF157   29402
Cards
Entrez_Gene (NCBI)RNF157  114804  ring finger protein 157
Aliases
GeneCards (Weizmann)RNF157
Ensembl hg19 (Hinxton)ENSG00000141576 [Gene_View]  chr17:74138534-74236390 [Contig_View]  RNF157 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141576 [Gene_View]  chr17:74138534-74236390 [Contig_View]  RNF157 [Vega]
ICGC DataPortalENSG00000141576
TCGA cBioPortalRNF157
AceView (NCBI)RNF157
Genatlas (Paris)RNF157
WikiGenes114804
SOURCE (Princeton)RNF157
Genetics Home Reference (NIH)RNF157
Genomic and cartography
GoldenPath hg19 (UCSC)RNF157  -     chr17:74138534-74236390 -  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF157  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblRNF157 - 17q25.1 [CytoView hg19]  RNF157 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIRNF157 [Mapview hg19]  RNF157 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA932192 AB067504 AK055949 AK091467 BC004231
RefSeq transcript (Entrez)NM_052916
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)RNF157
Cluster EST : UnigeneHs.500643 [ NCBI ]
CGAP (NCI)Hs.500643
Alternative Splicing GalleryENSG00000141576
Gene ExpressionRNF157 [ NCBI-GEO ]   RNF157 [ EBI - ARRAY_EXPRESS ]   RNF157 [ SEEK ]   RNF157 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF157 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114804
GTEX Portal (Tissue expression)RNF157
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PX1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PX1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PX1
Splice isoforms : SwissVarQ96PX1
PhosPhoSitePlusQ96PX1
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF157
DMDM Disease mutations114804
Blocks (Seattle)RNF157
SuperfamilyQ96PX1
Human Protein AtlasENSG00000141576
Peptide AtlasQ96PX1
HPRD15259
IPIIPI00796365   IPI00168161   IPI00386730   
Protein Interaction databases
DIP (DOE-UCLA)Q96PX1
IntAct (EBI)Q96PX1
FunCoupENSG00000141576
BioGRIDRNF157
STRING (EMBL)RNF157
ZODIACRNF157
Ontologies - Pathways
QuickGOQ96PX1
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkRNF157
Atlas of Cancer Signalling NetworkRNF157
Wikipedia pathwaysRNF157
Orthology - Evolution
OrthoDB114804
GeneTree (enSembl)ENSG00000141576
Phylogenetic Trees/Animal Genes : TreeFamRNF157
HOVERGENQ96PX1
HOGENOMQ96PX1
Homologs : HomoloGeneRNF157
Homology/Alignments : Family Browser (UCSC)RNF157
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF157 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF157
dbVarRNF157
ClinVarRNF157
1000_GenomesRNF157 
Exome Variant ServerRNF157
ExAC (Exome Aggregation Consortium)RNF157 (select the gene name)
Genetic variants : HAPMAP114804
Genomic Variants (DGV)RNF157 [DGVbeta]
DECIPHER (Syndromes)17:74138534-74236390  ENSG00000141576
CONAN: Copy Number AnalysisRNF157 
Mutations
ICGC Data PortalRNF157 
TCGA Data PortalRNF157 
Broad Tumor PortalRNF157
OASIS PortalRNF157 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF157  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF157
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF157
DgiDB (Drug Gene Interaction Database)RNF157
DoCM (Curated mutations)RNF157 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF157 (select a term)
intoGenRNF157
Cancer3DRNF157(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF157
Genetic Testing Registry RNF157
NextProtQ96PX1 [Medical]
TSGene114804
GENETestsRNF157
Huge Navigator RNF157 [HugePedia]
snp3D : Map Gene to Disease114804
BioCentury BCIQRNF157
ClinGenRNF157
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114804
Chemical/Pharm GKB GenePA134974884
Clinical trialRNF157
Miscellaneous
canSAR (ICR)RNF157 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF157
EVEXRNF157
GoPubMedRNF157
iHOPRNF157
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:20 CET 2017

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