Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RNF165 (ring finger protein 165)

Identity

Alias_symbol (synonym)ARKL2
RNF111L2
Other alias
HGNC (Hugo) RNF165
LocusID (NCBI) 494470
Atlas_Id 72692
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 46334224 and ends at 46460820 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNF165 (18q21.1) / SETBP1 (18q12.3)RNF165 (18q21.1) / SSR1 (6p24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNF165   31696
Cards
Entrez_Gene (NCBI)RNF165  494470  ring finger protein 165
AliasesARKL2; RNF111L2
GeneCards (Weizmann)RNF165
Ensembl hg19 (Hinxton)ENSG00000141622 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141622 [Gene_View]  ENSG00000141622 [Sequence]  chr18:46334224-46460820 [Contig_View]  RNF165 [Vega]
ICGC DataPortalENSG00000141622
TCGA cBioPortalRNF165
AceView (NCBI)RNF165
Genatlas (Paris)RNF165
WikiGenes494470
SOURCE (Princeton)RNF165
Genetics Home Reference (NIH)RNF165
Genomic and cartography
GoldenPath hg38 (UCSC)RNF165  -     chr18:46334224-46460820 +  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF165  -     18q21.1   [Description]    (hg19-Feb_2009)
RNF165 - 18q21.1 [CytoView hg19]  RNF165 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIRNF165 [Mapview hg19]  RNF165 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055997 AK074561 AK091537 AK096648 AK122819
RefSeq transcript (Entrez)NM_001256758 NM_152470
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF165
Cluster EST : UnigeneHs.501114 [ NCBI ]
CGAP (NCI)Hs.501114
Alternative Splicing GalleryENSG00000141622
Gene ExpressionRNF165 [ NCBI-GEO ]   RNF165 [ EBI - ARRAY_EXPRESS ]   RNF165 [ SEEK ]   RNF165 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF165 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494470
GTEX Portal (Tissue expression)RNF165
Human Protein AtlasENSG00000141622-RNF165 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSG1
Splice isoforms : SwissVarQ6ZSG1
PhosPhoSitePlusQ6ZSG1
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING-CH    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  RINGv (SM00744)  
Conserved Domain (NCBI)RNF165
DMDM Disease mutations494470
Blocks (Seattle)RNF165
PDB (RSDB)5D0I    5D0K    5D0M   
PDB Europe5D0I    5D0K    5D0M   
PDB (PDBSum)5D0I    5D0K    5D0M   
PDB (IMB)5D0I    5D0K    5D0M   
Structural Biology KnowledgeBase5D0I    5D0K    5D0M   
SCOP (Structural Classification of Proteins)5D0I    5D0K    5D0M   
CATH (Classification of proteins structures)5D0I    5D0K    5D0M   
SuperfamilyQ6ZSG1
Human Protein Atlas [tissue]ENSG00000141622-RNF165 [tissue]
Peptide AtlasQ6ZSG1
IPIIPI00161541   IPI01009500   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSG1
IntAct (EBI)Q6ZSG1
FunCoupENSG00000141622
BioGRIDRNF165
STRING (EMBL)RNF165
ZODIACRNF165
Ontologies - Pathways
QuickGOQ6ZSG1
Ontology : AmiGOprotein polyubiquitination  nucleus  cytoplasm  motor neuron axon guidance  zinc ion binding  multicellular organism aging  positive regulation of BMP signaling pathway  forelimb morphogenesis  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  protein complex  innervation  muscle structure development  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  nucleus  cytoplasm  motor neuron axon guidance  zinc ion binding  multicellular organism aging  positive regulation of BMP signaling pathway  forelimb morphogenesis  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  protein complex  innervation  muscle structure development  ubiquitin protein ligase activity  
NDEx NetworkRNF165
Atlas of Cancer Signalling NetworkRNF165
Wikipedia pathwaysRNF165
Orthology - Evolution
OrthoDB494470
GeneTree (enSembl)ENSG00000141622
Phylogenetic Trees/Animal Genes : TreeFamRNF165
HOGENOMQ6ZSG1
Homologs : HomoloGeneRNF165
Homology/Alignments : Family Browser (UCSC)RNF165
Gene fusions - Rearrangements
Fusion : QuiverRNF165
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF165 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF165
dbVarRNF165
ClinVarRNF165
1000_GenomesRNF165 
Exome Variant ServerRNF165
ExAC (Exome Aggregation Consortium)ENSG00000141622
GNOMAD BrowserENSG00000141622
Varsome BrowserRNF165
Genetic variants : HAPMAP494470
Genomic Variants (DGV)RNF165 [DGVbeta]
DECIPHERRNF165 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF165 
Mutations
ICGC Data PortalRNF165 
TCGA Data PortalRNF165 
Broad Tumor PortalRNF165
OASIS PortalRNF165 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF165  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF165
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF165
DgiDB (Drug Gene Interaction Database)RNF165
DoCM (Curated mutations)RNF165 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF165 (select a term)
intoGenRNF165
Cancer3DRNF165(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRNF165
MedgenRNF165
Genetic Testing Registry RNF165
NextProtQ6ZSG1 [Medical]
TSGene494470
GENETestsRNF165
Target ValidationRNF165
Huge Navigator RNF165 [HugePedia]
snp3D : Map Gene to Disease494470
BioCentury BCIQRNF165
ClinGenRNF165
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD494470
Chemical/Pharm GKB GenePA134972127
Clinical trialRNF165
Miscellaneous
canSAR (ICR)RNF165 (select the gene name)
DataMed IndexRNF165
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF165
EVEXRNF165
GoPubMedRNF165
iHOPRNF165
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Apr 30 13:54:46 CEST 2019
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