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RNF166 (ring finger protein 166)

Identity

Alias_symbol (synonym)MGC2647
MGC14381
Other alias-
HGNC (Hugo) RNF166
LocusID (NCBI) 115992
Atlas_Id 47438
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 88696495 and ends at 88706392 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF166 (16q24.3) / EPN2 (17p11.2)RNF166 (16q24.3) / HRH1 (3p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF166   28856
Cards
Entrez_Gene (NCBI)RNF166  115992  ring finger protein 166
Aliases
GeneCards (Weizmann)RNF166
Ensembl hg19 (Hinxton)ENSG00000158717 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158717 [Gene_View]  chr16:88696495-88706392 [Contig_View]  RNF166 [Vega]
ICGC DataPortalENSG00000158717
TCGA cBioPortalRNF166
AceView (NCBI)RNF166
Genatlas (Paris)RNF166
WikiGenes115992
SOURCE (Princeton)RNF166
Genetics Home Reference (NIH)RNF166
Genomic and cartography
GoldenPath hg38 (UCSC)RNF166  -     chr16:88696495-88706392 -  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF166  -     16q24.2   [Description]    (hg19-Feb_2009)
EnsemblRNF166 - 16q24.2 [CytoView hg19]  RNF166 - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBIRNF166 [Mapview hg19]  RNF166 [Mapview hg38]
OMIM617178   
Gene and transcription
Genbank (Entrez)AI800509 AK026860 AK057106 AK057201 AK290920
RefSeq transcript (Entrez)NM_001171815 NM_001171816 NM_178841
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF166
Cluster EST : UnigeneHs.513804 [ NCBI ]
CGAP (NCI)Hs.513804
Alternative Splicing GalleryENSG00000158717
Gene ExpressionRNF166 [ NCBI-GEO ]   RNF166 [ EBI - ARRAY_EXPRESS ]   RNF166 [ SEEK ]   RNF166 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF166 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115992
GTEX Portal (Tissue expression)RNF166
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A37
Splice isoforms : SwissVarQ96A37
PhosPhoSitePlusQ96A37
Domaine pattern : Prosite (Expaxy)ZF_C2HC_RNF (PS51803)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Di19_Zn_binding_dom    Znf-RING_LisH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-Di19 (PF05605)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam05605    pfam13445   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF166
DMDM Disease mutations115992
Blocks (Seattle)RNF166
SuperfamilyQ96A37
Human Protein AtlasENSG00000158717
Peptide AtlasQ96A37
HPRD15260
IPIIPI00059215   IPI00647888   IPI00955399   IPI00984381   
Protein Interaction databases
DIP (DOE-UCLA)Q96A37
IntAct (EBI)Q96A37
FunCoupENSG00000158717
BioGRIDRNF166
STRING (EMBL)RNF166
ZODIACRNF166
Ontologies - Pathways
QuickGOQ96A37
Ontology : AmiGOprotein polyubiquitination  intracellular  zinc ion binding  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  intracellular  zinc ion binding  ubiquitin conjugating enzyme binding  positive regulation of proteasomal ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkRNF166
Atlas of Cancer Signalling NetworkRNF166
Wikipedia pathwaysRNF166
Orthology - Evolution
OrthoDB115992
GeneTree (enSembl)ENSG00000158717
Phylogenetic Trees/Animal Genes : TreeFamRNF166
HOVERGENQ96A37
HOGENOMQ96A37
Homologs : HomoloGeneRNF166
Homology/Alignments : Family Browser (UCSC)RNF166
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF166 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF166
dbVarRNF166
ClinVarRNF166
1000_GenomesRNF166 
Exome Variant ServerRNF166
ExAC (Exome Aggregation Consortium)RNF166 (select the gene name)
Genetic variants : HAPMAP115992
Genomic Variants (DGV)RNF166 [DGVbeta]
DECIPHERRNF166 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF166 
Mutations
ICGC Data PortalRNF166 
TCGA Data PortalRNF166 
Broad Tumor PortalRNF166
OASIS PortalRNF166 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF166  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF166
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF166
DgiDB (Drug Gene Interaction Database)RNF166
DoCM (Curated mutations)RNF166 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF166 (select a term)
intoGenRNF166
Cancer3DRNF166(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617178   
Orphanet
MedgenRNF166
Genetic Testing Registry RNF166
NextProtQ96A37 [Medical]
TSGene115992
GENETestsRNF166
Target ValidationRNF166
Huge Navigator RNF166 [HugePedia]
snp3D : Map Gene to Disease115992
BioCentury BCIQRNF166
ClinGenRNF166
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115992
Chemical/Pharm GKB GenePA134915234
Clinical trialRNF166
Miscellaneous
canSAR (ICR)RNF166 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF166
EVEXRNF166
GoPubMedRNF166
iHOPRNF166
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:31 CEST 2017

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