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RNF167 (ring finger protein 167)

Identity

Alias_symbol (synonym)DKFZP566H073
Other alias5730408C10Rik
LP2254
RING105
HGNC (Hugo) RNF167
LocusID (NCBI) 26001
Atlas_Id 46787
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4843303 and ends at 4848518 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FKBP6 (7q11.23) / RNF167 (17p13.2)NDUFS2 (1q23.3) / RNF167 (17p13.2)RNF167 (17p13.2) / IGFBP5 (2q35)
RNF167 (17p13.2) / PIGL (17p11.2)RNF167 (17p13.2) / PLD2 (17p13.2)RNF167 17p13.2 / PIGL 17p11.2
RNF167 17p13.2 / PLD2 17p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF167   24544
Cards
Entrez_Gene (NCBI)RNF167  26001  ring finger protein 167
Aliases5730408C10Rik; LP2254; RING105
GeneCards (Weizmann)RNF167
Ensembl hg19 (Hinxton)ENSG00000108523 [Gene_View]  chr17:4843303-4848518 [Contig_View]  RNF167 [Vega]
Ensembl hg38 (Hinxton)ENSG00000108523 [Gene_View]  chr17:4843303-4848518 [Contig_View]  RNF167 [Vega]
ICGC DataPortalENSG00000108523
TCGA cBioPortalRNF167
AceView (NCBI)RNF167
Genatlas (Paris)RNF167
WikiGenes26001
SOURCE (Princeton)RNF167
Genetics Home Reference (NIH)RNF167
Genomic and cartography
GoldenPath hg19 (UCSC)RNF167  -     chr17:4843303-4848518 +  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF167  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblRNF167 - 17p13.2 [CytoView hg19]  RNF167 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIRNF167 [Mapview hg19]  RNF167 [Mapview hg38]
OMIM610431   
Gene and transcription
Genbank (Entrez)AA378194 AI350817 AK025329 AL050060 AL079315
RefSeq transcript (Entrez)NM_001320356 NM_001320357 NM_001320358 NM_001320359 NM_001320360 NM_001320361 NM_001320362 NM_001320363 NM_001320364 NM_001320365 NM_015528
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)RNF167
Cluster EST : UnigeneHs.7158 [ NCBI ]
CGAP (NCI)Hs.7158
Alternative Splicing GalleryENSG00000108523
Gene ExpressionRNF167 [ NCBI-GEO ]   RNF167 [ EBI - ARRAY_EXPRESS ]   RNF167 [ SEEK ]   RNF167 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF167 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26001
GTEX Portal (Tissue expression)RNF167
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6Y7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6Y7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6Y7
Splice isoforms : SwissVarQ9H6Y7
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
PhosPhoSitePlusQ9H6Y7
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)PA_domain    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam02225    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF167
DMDM Disease mutations26001
Blocks (Seattle)RNF167
SuperfamilyQ9H6Y7
Human Protein AtlasENSG00000108523
Peptide AtlasQ9H6Y7
HPRD15261
IPIIPI00023511   IPI00383720   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6Y7
IntAct (EBI)Q9H6Y7
FunCoupENSG00000108523
BioGRIDRNF167
STRING (EMBL)RNF167
ZODIACRNF167
Ontologies - Pathways
QuickGOQ9H6Y7
Ontology : AmiGOprotein polyubiquitination  ubiquitin-protein transferase activity  protein binding  cytoplasm  zinc ion binding  endomembrane system  integral component of membrane  ligase activity  negative regulation of cell cycle  
Ontology : EGO-EBIprotein polyubiquitination  ubiquitin-protein transferase activity  protein binding  cytoplasm  zinc ion binding  endomembrane system  integral component of membrane  ligase activity  negative regulation of cell cycle  
NDEx NetworkRNF167
Atlas of Cancer Signalling NetworkRNF167
Wikipedia pathwaysRNF167
Orthology - Evolution
OrthoDB26001
GeneTree (enSembl)ENSG00000108523
Phylogenetic Trees/Animal Genes : TreeFamRNF167
HOVERGENQ9H6Y7
HOGENOMQ9H6Y7
Homologs : HomoloGeneRNF167
Homology/Alignments : Family Browser (UCSC)RNF167
Gene fusions - Rearrangements
Fusion : MitelmanRNF167/PIGL [17p13.2/17p11.2]  
Fusion : MitelmanRNF167/PLD2 [17p13.2/17p13.2]  [t(17;17)(p13;p13)]  
Fusion: TCGARNF167 17p13.2 PIGL 17p11.2 BRCA
Fusion: TCGARNF167 17p13.2 PLD2 17p13.2 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF167 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF167
dbVarRNF167
ClinVarRNF167
1000_GenomesRNF167 
Exome Variant ServerRNF167
ExAC (Exome Aggregation Consortium)RNF167 (select the gene name)
Genetic variants : HAPMAP26001
Genomic Variants (DGV)RNF167 [DGVbeta]
DECIPHER (Syndromes)17:4843303-4848518  ENSG00000108523
CONAN: Copy Number AnalysisRNF167 
Mutations
ICGC Data PortalRNF167 
TCGA Data PortalRNF167 
Broad Tumor PortalRNF167
OASIS PortalRNF167 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF167  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF167
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF167
DgiDB (Drug Gene Interaction Database)RNF167
DoCM (Curated mutations)RNF167 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF167 (select a term)
intoGenRNF167
Cancer3DRNF167(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610431   
Orphanet
MedgenRNF167
Genetic Testing Registry RNF167
NextProtQ9H6Y7 [Medical]
TSGene26001
GENETestsRNF167
Huge Navigator RNF167 [HugePedia]
snp3D : Map Gene to Disease26001
BioCentury BCIQRNF167
ClinGenRNF167
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26001
Chemical/Pharm GKB GenePA134953711
Clinical trialRNF167
Miscellaneous
canSAR (ICR)RNF167 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF167
EVEXRNF167
GoPubMedRNF167
iHOPRNF167
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:40 CEST 2017

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