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RNF17 (ring finger protein 17)

Identity

Alias (NCBI)Mmip-2
SPATA23
TDRD4
HGNC (Hugo) RNF17
HGNC Alias symbMmip-2
SPATA23
FLJ11045
HGNC Alias namespermatogenesis associated 23
HGNC Previous nameTDRD4
HGNC Previous nametudor domain containing 4
LocusID (NCBI) 56163
Atlas_Id 42131
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 24764169 and ends at 24879920 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA1217 (10p12.2) / RNF17 (13q12.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RNF17   10060
Cards
Entrez_Gene (NCBI)RNF17    ring finger protein 17
AliasesMmip-2; SPATA23; TDRD4
GeneCards (Weizmann)RNF17
Ensembl hg19 (Hinxton)ENSG00000132972 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132972 [Gene_View]  ENSG00000132972 [Sequence]  chr13:24764169-24879920 [Contig_View]  RNF17 [Vega]
ICGC DataPortalENSG00000132972
TCGA cBioPortalRNF17
AceView (NCBI)RNF17
Genatlas (Paris)RNF17
SOURCE (Princeton)RNF17
Genetics Home Reference (NIH)RNF17
Genomic and cartography
GoldenPath hg38 (UCSC)RNF17  -     chr13:24764169-24879920 +  13q12.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF17  -     13q12.12   [Description]    (hg19-Feb_2009)
GoldenPathRNF17 - 13q12.12 [CytoView hg19]  RNF17 - 13q12.12 [CytoView hg38]
ImmunoBaseENSG00000132972
Genome Data Viewer NCBIRNF17 [Mapview hg19]  
OMIM605793   
Gene and transcription
Genbank (Entrez)AF285602 AF285603 AK001907 AK302405 AK302435
RefSeq transcript (Entrez)NM_001184993 NM_031277 NM_031994
Consensus coding sequences : CCDS (NCBI)RNF17
Gene ExpressionRNF17 [ NCBI-GEO ]   RNF17 [ EBI - ARRAY_EXPRESS ]   RNF17 [ SEEK ]   RNF17 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF17 [ Firebrowse - Broad ]
GenevisibleExpression of RNF17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56163
GTEX Portal (Tissue expression)RNF17
Human Protein AtlasENSG00000132972-RNF17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXT8
PhosPhoSitePlusQ9BXT8
Domaine pattern : Prosite (Expaxy)TUDOR (PS50304)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RNF17    SNase_OB-fold_sf    Tudor    Znf_RING    Znf_RING_CS   
Domain families : Pfam (Sanger)TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00567   
Domain families : Smart (EMBL)TUDOR (SM00333)  
Conserved Domain (NCBI)RNF17
PDB (RSDB)2EQK   
PDB Europe2EQK   
PDB (PDBSum)2EQK   
PDB (IMB)2EQK   
Structural Biology KnowledgeBase2EQK   
SCOP (Structural Classification of Proteins)2EQK   
CATH (Classification of proteins structures)2EQK   
SuperfamilyQ9BXT8
AlphaFold pdb e-kbQ9BXT8   
Human Protein Atlas [tissue]ENSG00000132972-RNF17 [tissue]
HPRD05779
Protein Interaction databases
DIP (DOE-UCLA)Q9BXT8
IntAct (EBI)Q9BXT8
BioGRIDRNF17
STRING (EMBL)RNF17
ZODIACRNF17
Ontologies - Pathways
QuickGOQ9BXT8
Ontology : AmiGOnucleus  cytoplasm  multicellular organism development  spermatogenesis  cell differentiation  metal ion binding  
Ontology : EGO-EBInucleus  cytoplasm  multicellular organism development  spermatogenesis  cell differentiation  metal ion binding  
NDEx NetworkRNF17
Atlas of Cancer Signalling NetworkRNF17
Wikipedia pathwaysRNF17
Orthology - Evolution
OrthoDB56163
GeneTree (enSembl)ENSG00000132972
Phylogenetic Trees/Animal Genes : TreeFamRNF17
Homologs : HomoloGeneRNF17
Homology/Alignments : Family Browser (UCSC)RNF17
Gene fusions - Rearrangements
Fusion : QuiverRNF17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF17
dbVarRNF17
ClinVarRNF17
MonarchRNF17
1000_GenomesRNF17 
Exome Variant ServerRNF17
GNOMAD BrowserENSG00000132972
Varsome BrowserRNF17
ACMGRNF17 variants
VarityQ9BXT8
Genomic Variants (DGV)RNF17 [DGVbeta]
DECIPHERRNF17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF17 
Mutations
ICGC Data PortalRNF17 
TCGA Data PortalRNF17 
Broad Tumor PortalRNF17
OASIS PortalRNF17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNF17
Mutations and Diseases : HGMDRNF17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRNF17
DgiDB (Drug Gene Interaction Database)RNF17
DoCM (Curated mutations)RNF17
CIViC (Clinical Interpretations of Variants in Cancer)RNF17
Cancer3DRNF17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605793   
Orphanet
DisGeNETRNF17
MedgenRNF17
Genetic Testing Registry RNF17
NextProtQ9BXT8 [Medical]
GENETestsRNF17
Target ValidationRNF17
Huge Navigator RNF17 [HugePedia]
ClinGenRNF17
Clinical trials, drugs, therapy
MyCancerGenomeRNF17
Protein Interactions : CTDRNF17
Pharm GKB GenePA34424
PharosQ9BXT8
Clinical trialRNF17
Miscellaneous
canSAR (ICR)RNF17
HarmonizomeRNF17
DataMed IndexRNF17
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRNF17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:29:13 CEST 2021

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