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RNF17 (ring finger protein 17)

Identity

Alias_namesTDRD4
tudor domain containing 4
Alias_symbol (synonym)Mmip-2
SPATA23
FLJ11045
Other alias
HGNC (Hugo) RNF17
LocusID (NCBI) 56163
Atlas_Id 42131
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 25338301 and ends at 25454058 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIAA1217 (10p12.2) / RNF17 (13q12.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF17   10060
Cards
Entrez_Gene (NCBI)RNF17  56163  ring finger protein 17
AliasesMmip-2; SPATA23; TDRD4
GeneCards (Weizmann)RNF17
Ensembl hg19 (Hinxton)ENSG00000132972 [Gene_View]  chr13:25338301-25454058 [Contig_View]  RNF17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132972 [Gene_View]  chr13:25338301-25454058 [Contig_View]  RNF17 [Vega]
ICGC DataPortalENSG00000132972
TCGA cBioPortalRNF17
AceView (NCBI)RNF17
Genatlas (Paris)RNF17
WikiGenes56163
SOURCE (Princeton)RNF17
Genetics Home Reference (NIH)RNF17
Genomic and cartography
GoldenPath hg19 (UCSC)RNF17  -     chr13:25338301-25454058 +  13q12.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF17  -     13q12.12   [Description]    (hg38-Dec_2013)
EnsemblRNF17 - 13q12.12 [CytoView hg19]  RNF17 - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBIRNF17 [Mapview hg19]  RNF17 [Mapview hg38]
OMIM605793   
Gene and transcription
Genbank (Entrez)AF285602 AF285603 AK001907 AK302405 AK302435
RefSeq transcript (Entrez)NM_001184993 NM_031277 NM_031994
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)RNF17
Cluster EST : UnigeneHs.572245 [ NCBI ]
CGAP (NCI)Hs.572245
Alternative Splicing GalleryENSG00000132972
Gene ExpressionRNF17 [ NCBI-GEO ]   RNF17 [ EBI - ARRAY_EXPRESS ]   RNF17 [ SEEK ]   RNF17 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56163
GTEX Portal (Tissue expression)RNF17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXT8
Splice isoforms : SwissVarQ9BXT8
PhosPhoSitePlusQ9BXT8
Domaine pattern : Prosite (Expaxy)TUDOR (PS50304)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Staphylococal_nuclease_OB-fold    Tudor    Znf_RING    Znf_RING_CS   
Domain families : Pfam (Sanger)TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00567   
Domain families : Smart (EMBL)RING (SM00184)  TUDOR (SM00333)  
Conserved Domain (NCBI)RNF17
DMDM Disease mutations56163
Blocks (Seattle)RNF17
PDB (SRS)2EQK   
PDB (PDBSum)2EQK   
PDB (IMB)2EQK   
PDB (RSDB)2EQK   
Structural Biology KnowledgeBase2EQK   
SCOP (Structural Classification of Proteins)2EQK   
CATH (Classification of proteins structures)2EQK   
SuperfamilyQ9BXT8
Human Protein AtlasENSG00000132972
Peptide AtlasQ9BXT8
HPRD05779
IPIIPI00827865   IPI00890818   IPI00005061   IPI00890741   IPI00514700   IPI01015872   IPI00797087   IPI00479906   IPI00785040   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXT8
IntAct (EBI)Q9BXT8
FunCoupENSG00000132972
BioGRIDRNF17
STRING (EMBL)RNF17
ZODIACRNF17
Ontologies - Pathways
QuickGOQ9BXT8
Ontology : AmiGOnucleus  cytoplasm  multicellular organism development  spermatid development  zinc ion binding  protein homodimerization activity  
Ontology : EGO-EBInucleus  cytoplasm  multicellular organism development  spermatid development  zinc ion binding  protein homodimerization activity  
NDEx NetworkRNF17
Atlas of Cancer Signalling NetworkRNF17
Wikipedia pathwaysRNF17
Orthology - Evolution
OrthoDB56163
GeneTree (enSembl)ENSG00000132972
Phylogenetic Trees/Animal Genes : TreeFamRNF17
HOVERGENQ9BXT8
HOGENOMQ9BXT8
Homologs : HomoloGeneRNF17
Homology/Alignments : Family Browser (UCSC)RNF17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF17
dbVarRNF17
ClinVarRNF17
1000_GenomesRNF17 
Exome Variant ServerRNF17
ExAC (Exome Aggregation Consortium)RNF17 (select the gene name)
Genetic variants : HAPMAP56163
Genomic Variants (DGV)RNF17 [DGVbeta]
DECIPHER (Syndromes)13:25338301-25454058  ENSG00000132972
CONAN: Copy Number AnalysisRNF17 
Mutations
ICGC Data PortalRNF17 
TCGA Data PortalRNF17 
Broad Tumor PortalRNF17
OASIS PortalRNF17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF17
DgiDB (Drug Gene Interaction Database)RNF17
DoCM (Curated mutations)RNF17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF17 (select a term)
intoGenRNF17
Cancer3DRNF17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605793   
Orphanet
MedgenRNF17
Genetic Testing Registry RNF17
NextProtQ9BXT8 [Medical]
TSGene56163
GENETestsRNF17
Huge Navigator RNF17 [HugePedia]
snp3D : Map Gene to Disease56163
BioCentury BCIQRNF17
ClinGenRNF17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56163
Chemical/Pharm GKB GenePA34424
Clinical trialRNF17
Miscellaneous
canSAR (ICR)RNF17 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF17
EVEXRNF17
GoPubMedRNF17
iHOPRNF17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:40 CEST 2017

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