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RNF175 (ring finger protein 175)

Identity

Alias_symbol (synonym)FLJ34190
Other alias-
HGNC (Hugo) RNF175
LocusID (NCBI) 285533
Atlas_Id 72693
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 154631312 and ends at 154681387 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF175   27735
Cards
Entrez_Gene (NCBI)RNF175  285533  ring finger protein 175
Aliases
GeneCards (Weizmann)RNF175
Ensembl hg19 (Hinxton)ENSG00000145428 [Gene_View]  chr4:154631312-154681387 [Contig_View]  RNF175 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145428 [Gene_View]  chr4:154631312-154681387 [Contig_View]  RNF175 [Vega]
ICGC DataPortalENSG00000145428
TCGA cBioPortalRNF175
AceView (NCBI)RNF175
Genatlas (Paris)RNF175
WikiGenes285533
SOURCE (Princeton)RNF175
Genetics Home Reference (NIH)RNF175
Genomic and cartography
GoldenPath hg19 (UCSC)RNF175  -     chr4:154631312-154681387 -  4q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF175  -     4q31.3   [Description]    (hg38-Dec_2013)
EnsemblRNF175 - 4q31.3 [CytoView hg19]  RNF175 - 4q31.3 [CytoView hg38]
Mapping of homologs : NCBIRNF175 [Mapview hg19]  RNF175 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091509 BC034385 HQ447865
RefSeq transcript (Entrez)NM_173662
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_016386 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)RNF175
Cluster EST : UnigeneHs.388364 [ NCBI ]
CGAP (NCI)Hs.388364
Alternative Splicing GalleryENSG00000145428
Gene ExpressionRNF175 [ NCBI-GEO ]   RNF175 [ EBI - ARRAY_EXPRESS ]   RNF175 [ SEEK ]   RNF175 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF175 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285533
GTEX Portal (Tissue expression)RNF175
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4F7
Splice isoforms : SwissVarQ8N4F7
PhosPhoSitePlusQ8N4F7
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF175
DMDM Disease mutations285533
Blocks (Seattle)RNF175
SuperfamilyQ8N4F7
Human Protein AtlasENSG00000145428
Peptide AtlasQ8N4F7
HPRD15262
IPIIPI00185911   IPI00385818   IPI00966582   IPI00966062   IPI00965755   IPI00966298   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4F7
IntAct (EBI)Q8N4F7
FunCoupENSG00000145428
BioGRIDRNF175
STRING (EMBL)RNF175
ZODIACRNF175
Ontologies - Pathways
QuickGOQ8N4F7
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum membrane  zinc ion binding  integral component of membrane  protein ubiquitination  ER-associated ubiquitin-dependent protein catabolic process  endoplasmic reticulum unfolded protein response  ubiquitin protein ligase activity  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum membrane  zinc ion binding  integral component of membrane  protein ubiquitination  ER-associated ubiquitin-dependent protein catabolic process  endoplasmic reticulum unfolded protein response  ubiquitin protein ligase activity  
NDEx NetworkRNF175
Atlas of Cancer Signalling NetworkRNF175
Wikipedia pathwaysRNF175
Orthology - Evolution
OrthoDB285533
GeneTree (enSembl)ENSG00000145428
Phylogenetic Trees/Animal Genes : TreeFamRNF175
HOVERGENQ8N4F7
HOGENOMQ8N4F7
Homologs : HomoloGeneRNF175
Homology/Alignments : Family Browser (UCSC)RNF175
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF175 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF175
dbVarRNF175
ClinVarRNF175
1000_GenomesRNF175 
Exome Variant ServerRNF175
ExAC (Exome Aggregation Consortium)RNF175 (select the gene name)
Genetic variants : HAPMAP285533
Genomic Variants (DGV)RNF175 [DGVbeta]
DECIPHER (Syndromes)4:154631312-154681387  ENSG00000145428
CONAN: Copy Number AnalysisRNF175 
Mutations
ICGC Data PortalRNF175 
TCGA Data PortalRNF175 
Broad Tumor PortalRNF175
OASIS PortalRNF175 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF175  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF175
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF175
DgiDB (Drug Gene Interaction Database)RNF175
DoCM (Curated mutations)RNF175 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF175 (select a term)
intoGenRNF175
Cancer3DRNF175(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF175
Genetic Testing Registry RNF175
NextProtQ8N4F7 [Medical]
TSGene285533
GENETestsRNF175
Huge Navigator RNF175 [HugePedia]
snp3D : Map Gene to Disease285533
BioCentury BCIQRNF175
ClinGenRNF175
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285533
Chemical/Pharm GKB GenePA134909663
Clinical trialRNF175
Miscellaneous
canSAR (ICR)RNF175 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF175
EVEXRNF175
GoPubMedRNF175
iHOPRNF175
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:17 CET 2017

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