RNF180 (ring finger protein 180)

2012-04-01  

Identity

HGNC
RNF180
LOCATION
5q12.3
LOCUSID
285671
ALIAS
RINES
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 285671
MIM: 616015
HGNC: 27752
Ensembl: ENSG00000164197

Variants:

dbSNP: 285671
ClinVar: 285671
TCGA: ENSG00000164197
COSMIC: RNF180

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000164197ENST00000296615Q86T96
ENSG00000164197ENST00000389100Q86T96
ENSG00000164197ENST00000504296D6RE88

Expression (GTEx)

0
5
10
15
20
25
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
225634612012HTR1A a novel type 1 diabetes susceptibility gene on chromosome 5p13-q13.5
217174262012Characterization of the gene structure, functional significance, and clinical application of RNF180, a novel gene in gastric cancer.0
248334022014Methylation of CpG sites in RNF180 DNA promoter prediction poor survival of gastric cancer.0
257694512015Evaluating the clinical feasibility: The direct bisulfite genomic sequencing for examination of methylated status of E3 ubiquitin ligase RNF180 DNA promoter to predict the survival of gastric cancer.0
268055522016Clinical and experimental role of ring finger protein 180 on lymph node metastasis and survival in gastric cancer.0
270501492016Promoter methylation of RNF180 is associated with H.pylori infection and serves as a marker for gastric cancer and atrophic gastritis.0
272232572016Mediation of the malignant biological characteristics of gastric cancer cells by the methylated CpG islands in RNF180 DNA promoter.0

Citation

Dessen P

RNF180 (ring finger protein 180)

Atlas Genet Cytogenet Oncol Haematol. 2012-04-01

Online version: http://atlasgeneticsoncology.org/gene/52691/rnf180