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RNF181 (ring finger protein 181)

Identity

Alias_symbol (synonym)HSPC238
Other alias
HGNC (Hugo) RNF181
LocusID (NCBI) 51255
Atlas_Id 52384
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85595714 and ends at 85597708 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF181   28037
Cards
Entrez_Gene (NCBI)RNF181  51255  ring finger protein 181
AliasesHSPC238
GeneCards (Weizmann)RNF181
Ensembl hg19 (Hinxton)ENSG00000168894 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168894 [Gene_View]  chr2:85595714-85597708 [Contig_View]  RNF181 [Vega]
ICGC DataPortalENSG00000168894
TCGA cBioPortalRNF181
AceView (NCBI)RNF181
Genatlas (Paris)RNF181
WikiGenes51255
SOURCE (Princeton)RNF181
Genetics Home Reference (NIH)RNF181
Genomic and cartography
GoldenPath hg38 (UCSC)RNF181  -     chr2:85595714-85597708 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF181  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblRNF181 - 2p11.2 [CytoView hg19]  RNF181 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIRNF181 [Mapview hg19]  RNF181 [Mapview hg38]
OMIM612490   
Gene and transcription
Genbank (Entrez)AF151072 AK222700 BC002803 CB131242 CR457165
RefSeq transcript (Entrez)NM_016494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF181
Cluster EST : UnigeneHs.356187 [ NCBI ]
CGAP (NCI)Hs.356187
Alternative Splicing GalleryENSG00000168894
Gene ExpressionRNF181 [ NCBI-GEO ]   RNF181 [ EBI - ARRAY_EXPRESS ]   RNF181 [ SEEK ]   RNF181 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF181 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51255
GTEX Portal (Tissue expression)RNF181
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0P0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0P0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0P0
Splice isoforms : SwissVarQ9P0P0
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ9P0P0
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF181
DMDM Disease mutations51255
Blocks (Seattle)RNF181
SuperfamilyQ9P0P0
Human Protein AtlasENSG00000168894
Peptide AtlasQ9P0P0
HPRD14236
IPIIPI00292354   IPI00917561   IPI00927509   IPI00926363   IPI00927050   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0P0
IntAct (EBI)Q9P0P0
FunCoupENSG00000168894
BioGRIDRNF181
STRING (EMBL)RNF181
ZODIACRNF181
Ontologies - Pathways
QuickGOQ9P0P0
Ontology : AmiGOprotein polyubiquitination  ubiquitin-protein transferase activity  cytoplasm  zinc ion binding  protein ubiquitination  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  protein autoubiquitination  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  ubiquitin-protein transferase activity  cytoplasm  zinc ion binding  protein ubiquitination  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  protein autoubiquitination  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
NDEx NetworkRNF181
Atlas of Cancer Signalling NetworkRNF181
Wikipedia pathwaysRNF181
Orthology - Evolution
OrthoDB51255
GeneTree (enSembl)ENSG00000168894
Phylogenetic Trees/Animal Genes : TreeFamRNF181
HOVERGENQ9P0P0
HOGENOMQ9P0P0
Homologs : HomoloGeneRNF181
Homology/Alignments : Family Browser (UCSC)RNF181
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF181 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF181
dbVarRNF181
ClinVarRNF181
1000_GenomesRNF181 
Exome Variant ServerRNF181
ExAC (Exome Aggregation Consortium)RNF181 (select the gene name)
Genetic variants : HAPMAP51255
Genomic Variants (DGV)RNF181 [DGVbeta]
DECIPHERRNF181 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF181 
Mutations
ICGC Data PortalRNF181 
TCGA Data PortalRNF181 
Broad Tumor PortalRNF181
OASIS PortalRNF181 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF181  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF181
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF181
DgiDB (Drug Gene Interaction Database)RNF181
DoCM (Curated mutations)RNF181 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF181 (select a term)
intoGenRNF181
Cancer3DRNF181(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612490   
Orphanet
MedgenRNF181
Genetic Testing Registry RNF181
NextProtQ9P0P0 [Medical]
TSGene51255
GENETestsRNF181
Target ValidationRNF181
Huge Navigator RNF181 [HugePedia]
snp3D : Map Gene to Disease51255
BioCentury BCIQRNF181
ClinGenRNF181
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51255
Chemical/Pharm GKB GenePA162401586
Clinical trialRNF181
Miscellaneous
canSAR (ICR)RNF181 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF181
EVEXRNF181
GoPubMedRNF181
iHOPRNF181
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:01 CEST 2017

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