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RNF182 (ring finger protein 182)

Identity

Alias_symbol (synonym)MGC33993
Other alias-
HGNC (Hugo) RNF182
LocusID (NCBI) 221687
Atlas_Id 72694
Location 6p23  [Link to chromosome band 6p23]
Location_base_pair Starts at 13924867 and ends at 13980009 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MED20 (6p21.1) / RNF182 (6p23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p21;p23) MED20/RNF182


External links

Nomenclature
HGNC (Hugo)RNF182   28522
Cards
Entrez_Gene (NCBI)RNF182  221687  ring finger protein 182
Aliases
GeneCards (Weizmann)RNF182
Ensembl hg19 (Hinxton)ENSG00000180537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180537 [Gene_View]  ENSG00000180537 [Sequence]  chr6:13924867-13980009 [Contig_View]  RNF182 [Vega]
ICGC DataPortalENSG00000180537
TCGA cBioPortalRNF182
AceView (NCBI)RNF182
Genatlas (Paris)RNF182
WikiGenes221687
SOURCE (Princeton)RNF182
Genetics Home Reference (NIH)RNF182
Genomic and cartography
GoldenPath hg38 (UCSC)RNF182  -     chr6:13924867-13980009 +  6p23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF182  -     6p23   [Description]    (hg19-Feb_2009)
EnsemblRNF182 - 6p23 [CytoView hg19]  RNF182 - 6p23 [CytoView hg38]
Mapping of homologs : NCBIRNF182 [Mapview hg19]  RNF182 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090576 AK098091 AK315528 AW731636 BC030666
RefSeq transcript (Entrez)NM_001165032 NM_001165033 NM_001165034 NM_152737
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF182
Cluster EST : UnigeneHs.111164 [ NCBI ]
CGAP (NCI)Hs.111164
Alternative Splicing GalleryENSG00000180537
Gene ExpressionRNF182 [ NCBI-GEO ]   RNF182 [ EBI - ARRAY_EXPRESS ]   RNF182 [ SEEK ]   RNF182 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF182 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221687
GTEX Portal (Tissue expression)RNF182
Human Protein AtlasENSG00000180537-RNF182 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6D2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6D2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6D2
Splice isoforms : SwissVarQ8N6D2
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8N6D2
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF182
DMDM Disease mutations221687
Blocks (Seattle)RNF182
SuperfamilyQ8N6D2
Human Protein Atlas [tissue]ENSG00000180537-RNF182 [tissue]
Peptide AtlasQ8N6D2
HPRD15264
IPIIPI00166990   IPI00945753   IPI00945563   IPI00947537   IPI00945038   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6D2
IntAct (EBI)Q8N6D2
FunCoupENSG00000180537
BioGRIDRNF182
STRING (EMBL)RNF182
ZODIACRNF182
Ontologies - Pathways
QuickGOQ8N6D2
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  cytoplasm  zinc ion binding  integral component of membrane  protein ubiquitination  protein ubiquitination  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  cytoplasm  zinc ion binding  integral component of membrane  protein ubiquitination  protein ubiquitination  
NDEx NetworkRNF182
Atlas of Cancer Signalling NetworkRNF182
Wikipedia pathwaysRNF182
Orthology - Evolution
OrthoDB221687
GeneTree (enSembl)ENSG00000180537
Phylogenetic Trees/Animal Genes : TreeFamRNF182
HOVERGENQ8N6D2
HOGENOMQ8N6D2
Homologs : HomoloGeneRNF182
Homology/Alignments : Family Browser (UCSC)RNF182
Gene fusions - Rearrangements
Fusion : QuiverRNF182
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF182 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF182
dbVarRNF182
ClinVarRNF182
1000_GenomesRNF182 
Exome Variant ServerRNF182
ExAC (Exome Aggregation Consortium)ENSG00000180537
GNOMAD BrowserENSG00000180537
Varsome BrowserRNF182
Genetic variants : HAPMAP221687
Genomic Variants (DGV)RNF182 [DGVbeta]
DECIPHERRNF182 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF182 
Mutations
ICGC Data PortalRNF182 
TCGA Data PortalRNF182 
Broad Tumor PortalRNF182
OASIS PortalRNF182 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF182  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF182
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF182
DgiDB (Drug Gene Interaction Database)RNF182
DoCM (Curated mutations)RNF182 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF182 (select a term)
intoGenRNF182
Cancer3DRNF182(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRNF182
MedgenRNF182
Genetic Testing Registry RNF182
NextProtQ8N6D2 [Medical]
TSGene221687
GENETestsRNF182
Target ValidationRNF182
Huge Navigator RNF182 [HugePedia]
snp3D : Map Gene to Disease221687
BioCentury BCIQRNF182
ClinGenRNF182
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221687
Chemical/Pharm GKB GenePA134975171
Clinical trialRNF182
Miscellaneous
canSAR (ICR)RNF182 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF182
EVEXRNF182
GoPubMedRNF182
iHOPRNF182
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:26:55 CEST 2018

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