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RNF183 (ring finger protein 183)

Identity

Alias_symbol (synonym)MGC4734
Other alias-
HGNC (Hugo) RNF183
LocusID (NCBI) 138065
Atlas_Id 72695
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 113297093 and ends at 113299040 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NAA38 (17p13.1) / RNF183 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF183   28721
Cards
Entrez_Gene (NCBI)RNF183  138065  ring finger protein 183
Aliases
GeneCards (Weizmann)RNF183
Ensembl hg19 (Hinxton)ENSG00000165188 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165188 [Gene_View]  chr9:113297093-113299040 [Contig_View]  RNF183 [Vega]
ICGC DataPortalENSG00000165188
TCGA cBioPortalRNF183
AceView (NCBI)RNF183
Genatlas (Paris)RNF183
WikiGenes138065
SOURCE (Princeton)RNF183
Genetics Home Reference (NIH)RNF183
Genomic and cartography
GoldenPath hg38 (UCSC)RNF183  -     chr9:113297093-113299040 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF183  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblRNF183 - 9q32 [CytoView hg19]  RNF183 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIRNF183 [Mapview hg19]  RNF183 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055759 AK091940 BC013036 BE463594 DQ892574
RefSeq transcript (Entrez)NM_145051
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF183
Cluster EST : UnigeneHs.729641 [ NCBI ]
CGAP (NCI)Hs.729641
Alternative Splicing GalleryENSG00000165188
Gene ExpressionRNF183 [ NCBI-GEO ]   RNF183 [ EBI - ARRAY_EXPRESS ]   RNF183 [ SEEK ]   RNF183 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF183 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138065
GTEX Portal (Tissue expression)RNF183
Human Protein AtlasENSG00000165188-RNF183 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96D59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96D59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96D59
Splice isoforms : SwissVarQ96D59
PhosPhoSitePlusQ96D59
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF183
DMDM Disease mutations138065
Blocks (Seattle)RNF183
SuperfamilyQ96D59
Human Protein Atlas [tissue]ENSG00000165188-RNF183 [tissue]
Peptide AtlasQ96D59
HPRD10082
IPIIPI00177673   
Protein Interaction databases
DIP (DOE-UCLA)Q96D59
IntAct (EBI)Q96D59
FunCoupENSG00000165188
BioGRIDRNF183
STRING (EMBL)RNF183
ZODIACRNF183
Ontologies - Pathways
QuickGOQ96D59
Ontology : AmiGOprotein polyubiquitination  protein binding  endoplasmic reticulum  zinc ion binding  integral component of membrane  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  protein binding  endoplasmic reticulum  zinc ion binding  integral component of membrane  ubiquitin protein ligase activity  
NDEx NetworkRNF183
Atlas of Cancer Signalling NetworkRNF183
Wikipedia pathwaysRNF183
Orthology - Evolution
OrthoDB138065
GeneTree (enSembl)ENSG00000165188
Phylogenetic Trees/Animal Genes : TreeFamRNF183
HOVERGENQ96D59
HOGENOMQ96D59
Homologs : HomoloGeneRNF183
Homology/Alignments : Family Browser (UCSC)RNF183
Gene fusions - Rearrangements
Tumor Fusion PortalRNF183
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF183 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF183
dbVarRNF183
ClinVarRNF183
1000_GenomesRNF183 
Exome Variant ServerRNF183
ExAC (Exome Aggregation Consortium)ENSG00000165188
GNOMAD BrowserENSG00000165188
Genetic variants : HAPMAP138065
Genomic Variants (DGV)RNF183 [DGVbeta]
DECIPHERRNF183 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF183 
Mutations
ICGC Data PortalRNF183 
TCGA Data PortalRNF183 
Broad Tumor PortalRNF183
OASIS PortalRNF183 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF183  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF183
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF183
DgiDB (Drug Gene Interaction Database)RNF183
DoCM (Curated mutations)RNF183 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF183 (select a term)
intoGenRNF183
Cancer3DRNF183(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRNF183
MedgenRNF183
Genetic Testing Registry RNF183
NextProtQ96D59 [Medical]
TSGene138065
GENETestsRNF183
Target ValidationRNF183
Huge Navigator RNF183 [HugePedia]
snp3D : Map Gene to Disease138065
BioCentury BCIQRNF183
ClinGenRNF183
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138065
Chemical/Pharm GKB GenePA142671055
Clinical trialRNF183
Miscellaneous
canSAR (ICR)RNF183 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF183
EVEXRNF183
GoPubMedRNF183
iHOPRNF183
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:20:36 CET 2017

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