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RNF186 (ring finger protein 186)

Identity

Alias_symbol (synonym)FLJ20225
Other alias-
HGNC (Hugo) RNF186
LocusID (NCBI) 54546
Atlas_Id 72698
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 19814029 and ends at 19815278 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF186   25978
Cards
Entrez_Gene (NCBI)RNF186  54546  ring finger protein 186
Aliases
GeneCards (Weizmann)RNF186
Ensembl hg19 (Hinxton)ENSG00000178828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178828 [Gene_View]  chr1:19814029-19815278 [Contig_View]  RNF186 [Vega]
ICGC DataPortalENSG00000178828
TCGA cBioPortalRNF186
AceView (NCBI)RNF186
Genatlas (Paris)RNF186
WikiGenes54546
SOURCE (Princeton)RNF186
Genetics Home Reference (NIH)RNF186
Genomic and cartography
GoldenPath hg38 (UCSC)RNF186  -     chr1:19814029-19815278 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF186  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblRNF186 - 1p36.13 [CytoView hg19]  RNF186 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIRNF186 [Mapview hg19]  RNF186 [Mapview hg38]
OMIM617163   
Gene and transcription
Genbank (Entrez)AK000232 AK222991 BC030960 BC051880 CR457228
RefSeq transcript (Entrez)NM_019062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF186
Cluster EST : UnigeneHs.124835 [ NCBI ]
CGAP (NCI)Hs.124835
Alternative Splicing GalleryENSG00000178828
Gene ExpressionRNF186 [ NCBI-GEO ]   RNF186 [ EBI - ARRAY_EXPRESS ]   RNF186 [ SEEK ]   RNF186 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF186 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54546
GTEX Portal (Tissue expression)RNF186
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXI6
Splice isoforms : SwissVarQ9NXI6
PhosPhoSitePlusQ9NXI6
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF186
DMDM Disease mutations54546
Blocks (Seattle)RNF186
SuperfamilyQ9NXI6
Human Protein AtlasENSG00000178828
Peptide AtlasQ9NXI6
HPRD07885
IPIIPI00005114   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXI6
IntAct (EBI)Q9NXI6
FunCoupENSG00000178828
BioGRIDRNF186
STRING (EMBL)RNF186
ZODIACRNF186
Ontologies - Pathways
QuickGOQ9NXI6
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkRNF186
Atlas of Cancer Signalling NetworkRNF186
Wikipedia pathwaysRNF186
Orthology - Evolution
OrthoDB54546
GeneTree (enSembl)ENSG00000178828
Phylogenetic Trees/Animal Genes : TreeFamRNF186
HOVERGENQ9NXI6
HOGENOMQ9NXI6
Homologs : HomoloGeneRNF186
Homology/Alignments : Family Browser (UCSC)RNF186
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF186 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF186
dbVarRNF186
ClinVarRNF186
1000_GenomesRNF186 
Exome Variant ServerRNF186
ExAC (Exome Aggregation Consortium)RNF186 (select the gene name)
Genetic variants : HAPMAP54546
Genomic Variants (DGV)RNF186 [DGVbeta]
DECIPHERRNF186 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF186 
Mutations
ICGC Data PortalRNF186 
TCGA Data PortalRNF186 
Broad Tumor PortalRNF186
OASIS PortalRNF186 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF186  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF186
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF186
DgiDB (Drug Gene Interaction Database)RNF186
DoCM (Curated mutations)RNF186 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF186 (select a term)
intoGenRNF186
Cancer3DRNF186(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617163   
Orphanet
MedgenRNF186
Genetic Testing Registry RNF186
NextProtQ9NXI6 [Medical]
TSGene54546
GENETestsRNF186
Target ValidationRNF186
Huge Navigator RNF186 [HugePedia]
snp3D : Map Gene to Disease54546
BioCentury BCIQRNF186
ClinGenRNF186
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54546
Chemical/Pharm GKB GenePA142671057
Clinical trialRNF186
Miscellaneous
canSAR (ICR)RNF186 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF186
EVEXRNF186
GoPubMedRNF186
iHOPRNF186
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:26 CEST 2017

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