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RNF187 (ring finger protein 187)

Identity

Other aliasRACO-1
RACO1
HGNC (Hugo) RNF187
LocusID (NCBI) 149603
Atlas_Id 54585
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228675068 and ends at 228683889 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PSAP (10q22.1) / RNF187 (1q42.13)RNF187 (1q42.13) / OBSCN (1q42.13)RNF187 (1q42.13) / PLCB4 (20p12.2)
RNF187 (1q42.13) / RAB11FIP3 (16p13.3)TNK2 (3q29) / RNF187 (1q42.13)ZNF398 (7q36.1) / RNF187 (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF187   27146
Cards
Entrez_Gene (NCBI)RNF187  149603  ring finger protein 187
AliasesRACO-1; RACO1
GeneCards (Weizmann)RNF187
Ensembl hg19 (Hinxton)ENSG00000168159 [Gene_View]  chr1:228675068-228683889 [Contig_View]  RNF187 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168159 [Gene_View]  chr1:228675068-228683889 [Contig_View]  RNF187 [Vega]
ICGC DataPortalENSG00000168159
TCGA cBioPortalRNF187
AceView (NCBI)RNF187
Genatlas (Paris)RNF187
WikiGenes149603
SOURCE (Princeton)RNF187
Genetics Home Reference (NIH)RNF187
Genomic and cartography
GoldenPath hg19 (UCSC)RNF187  -     chr1:228675068-228683889 +  1q42.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF187  -     1q42.13   [Description]    (hg38-Dec_2013)
EnsemblRNF187 - 1q42.13 [CytoView hg19]  RNF187 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIRNF187 [Mapview hg19]  RNF187 [Mapview hg38]
OMIM613754   
Gene and transcription
Genbank (Entrez)AI269201 BC000821 BC008022 BC012758 BC015435
RefSeq transcript (Entrez)NM_001010858
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)RNF187
Cluster EST : UnigeneHs.679030 [ NCBI ]
CGAP (NCI)Hs.679030
Alternative Splicing GalleryENSG00000168159
Gene ExpressionRNF187 [ NCBI-GEO ]   RNF187 [ EBI - ARRAY_EXPRESS ]   RNF187 [ SEEK ]   RNF187 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF187 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149603
GTEX Portal (Tissue expression)RNF187
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TA31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TA31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TA31
Splice isoforms : SwissVarQ5TA31
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
PhosPhoSitePlusQ5TA31
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00097   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF187
DMDM Disease mutations149603
Blocks (Seattle)RNF187
SuperfamilyQ5TA31
Human Protein AtlasENSG00000168159
Peptide AtlasQ5TA31
IPIIPI00888398   IPI00815782   
Protein Interaction databases
DIP (DOE-UCLA)Q5TA31
IntAct (EBI)Q5TA31
FunCoupENSG00000168159
BioGRIDRNF187
STRING (EMBL)RNF187
ZODIACRNF187
Ontologies - Pathways
QuickGOQ5TA31
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  cytoplasm  zinc ion binding  positive regulation of cell proliferation  ligase activity  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of transcription, DNA-templated  protein autoubiquitination  protein K48-linked ubiquitination  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  cytoplasm  zinc ion binding  positive regulation of cell proliferation  ligase activity  proteasome-mediated ubiquitin-dependent protein catabolic process  positive regulation of transcription, DNA-templated  protein autoubiquitination  protein K48-linked ubiquitination  
NDEx NetworkRNF187
Atlas of Cancer Signalling NetworkRNF187
Wikipedia pathwaysRNF187
Orthology - Evolution
OrthoDB149603
GeneTree (enSembl)ENSG00000168159
Phylogenetic Trees/Animal Genes : TreeFamRNF187
HOVERGENQ5TA31
HOGENOMQ5TA31
Homologs : HomoloGeneRNF187
Homology/Alignments : Family Browser (UCSC)RNF187
Gene fusions - Rearrangements
Fusion : MitelmanRNF187/OBSCN [1q42.13/1q42.13]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF187 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF187
dbVarRNF187
ClinVarRNF187
1000_GenomesRNF187 
Exome Variant ServerRNF187
ExAC (Exome Aggregation Consortium)RNF187 (select the gene name)
Genetic variants : HAPMAP149603
Genomic Variants (DGV)RNF187 [DGVbeta]
DECIPHER (Syndromes)1:228675068-228683889  ENSG00000168159
CONAN: Copy Number AnalysisRNF187 
Mutations
ICGC Data PortalRNF187 
TCGA Data PortalRNF187 
Broad Tumor PortalRNF187
OASIS PortalRNF187 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF187  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF187
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF187
DgiDB (Drug Gene Interaction Database)RNF187
DoCM (Curated mutations)RNF187 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF187 (select a term)
intoGenRNF187
Cancer3DRNF187(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613754   
Orphanet
MedgenRNF187
Genetic Testing Registry RNF187
NextProtQ5TA31 [Medical]
TSGene149603
GENETestsRNF187
Huge Navigator RNF187 [HugePedia]
snp3D : Map Gene to Disease149603
BioCentury BCIQRNF187
ClinGenRNF187
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149603
Chemical/Pharm GKB GenePA142671058
Clinical trialRNF187
Miscellaneous
canSAR (ICR)RNF187 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF187
EVEXRNF187
GoPubMedRNF187
iHOPRNF187
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:41 CEST 2017

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