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RNF187 (ring finger protein 187)

Identity

Alias (NCBI)RACO-1
RACO1
HGNC (Hugo) RNF187
HGNC Alias symbRACO1
RACO-1
HGNC Alias namering domain AP-1 co-activator 1
LocusID (NCBI) 149603
Atlas_Id 54585
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228487382 and ends at 228496188 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PSAP (10q22.1) / RNF187 (1q42.13)RNF187 (1q42.13) / OBSCN (1q42.13)RNF187 (1q42.13) / PLCB4 (20p12.2)
RNF187 (1q42.13) / RAB11FIP3 (16p13.3)TNK2 (3q29) / RNF187 (1q42.13)ZNF398 (7q36.1) / RNF187 (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RNF187   27146
Cards
Entrez_Gene (NCBI)RNF187    ring finger protein 187
AliasesRACO-1; RACO1
GeneCards (Weizmann)RNF187
Ensembl hg19 (Hinxton)ENSG00000168159 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168159 [Gene_View]  ENSG00000168159 [Sequence]  chr1:228487382-228496188 [Contig_View]  RNF187 [Vega]
ICGC DataPortalENSG00000168159
TCGA cBioPortalRNF187
AceView (NCBI)RNF187
Genatlas (Paris)RNF187
SOURCE (Princeton)RNF187
Genetics Home Reference (NIH)RNF187
Genomic and cartography
GoldenPath hg38 (UCSC)RNF187  -     chr1:228487382-228496188 +  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF187  -     1q42.13   [Description]    (hg19-Feb_2009)
GoldenPathRNF187 - 1q42.13 [CytoView hg19]  RNF187 - 1q42.13 [CytoView hg38]
ImmunoBaseENSG00000168159
Genome Data Viewer NCBIRNF187 [Mapview hg19]  
OMIM613754   
Gene and transcription
Genbank (Entrez)AI269201 BC000821 BC008022 BC012758 BC015435
RefSeq transcript (Entrez)NM_001010858
Consensus coding sequences : CCDS (NCBI)RNF187
Gene ExpressionRNF187 [ NCBI-GEO ]   RNF187 [ EBI - ARRAY_EXPRESS ]   RNF187 [ SEEK ]   RNF187 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF187 [ Firebrowse - Broad ]
GenevisibleExpression of RNF187 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149603
GTEX Portal (Tissue expression)RNF187
Human Protein AtlasENSG00000168159-RNF187 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TA31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TA31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TA31
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ5TA31
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00097   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF187
SuperfamilyQ5TA31
AlphaFold pdb e-kbQ5TA31   
Human Protein Atlas [tissue]ENSG00000168159-RNF187 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5TA31
IntAct (EBI)Q5TA31
BioGRIDRNF187
STRING (EMBL)RNF187
ZODIACRNF187
Ontologies - Pathways
QuickGOQ5TA31
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  positive regulation of cell population proliferation  regulation of gene expression  protein ubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  innate immune response  positive regulation of transcription, DNA-templated  metal ion binding  protein autoubiquitination  ubiquitin protein ligase activity  protein K48-linked ubiquitination  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  positive regulation of cell population proliferation  regulation of gene expression  protein ubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  innate immune response  positive regulation of transcription, DNA-templated  metal ion binding  protein autoubiquitination  ubiquitin protein ligase activity  protein K48-linked ubiquitination  
NDEx NetworkRNF187
Atlas of Cancer Signalling NetworkRNF187
Wikipedia pathwaysRNF187
Orthology - Evolution
OrthoDB149603
GeneTree (enSembl)ENSG00000168159
Phylogenetic Trees/Animal Genes : TreeFamRNF187
Homologs : HomoloGeneRNF187
Homology/Alignments : Family Browser (UCSC)RNF187
Gene fusions - Rearrangements
Fusion : MitelmanRNF187/OBSCN [1q42.13/1q42.13]  
Fusion : QuiverRNF187
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF187 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF187
dbVarRNF187
ClinVarRNF187
MonarchRNF187
1000_GenomesRNF187 
Exome Variant ServerRNF187
GNOMAD BrowserENSG00000168159
Varsome BrowserRNF187
ACMGRNF187 variants
VarityQ5TA31
Genomic Variants (DGV)RNF187 [DGVbeta]
DECIPHERRNF187 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF187 
Mutations
ICGC Data PortalRNF187 
TCGA Data PortalRNF187 
Broad Tumor PortalRNF187
OASIS PortalRNF187 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF187  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNF187
Mutations and Diseases : HGMDRNF187
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRNF187
DgiDB (Drug Gene Interaction Database)RNF187
DoCM (Curated mutations)RNF187
CIViC (Clinical Interpretations of Variants in Cancer)RNF187
Cancer3DRNF187
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613754   
Orphanet
DisGeNETRNF187
MedgenRNF187
Genetic Testing Registry RNF187
NextProtQ5TA31 [Medical]
GENETestsRNF187
Target ValidationRNF187
Huge Navigator RNF187 [HugePedia]
ClinGenRNF187
Clinical trials, drugs, therapy
MyCancerGenomeRNF187
Protein Interactions : CTDRNF187
Pharm GKB GenePA142671058
PharosQ5TA31
Clinical trialRNF187
Miscellaneous
canSAR (ICR)RNF187
HarmonizomeRNF187
DataMed IndexRNF187
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRNF187
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:29:15 CEST 2021

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