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RNF20 (ring finger protein 20)

Identity

Alias_namesring finger protein 20
ring finger protein 20, E3 ubiquitin protein ligase
Alias_symbol (synonym)FLJ20382
FLJ11189
KAIA2779
BRE1A
hBRE1
BRE1
Other alias
HGNC (Hugo) RNF20
LocusID (NCBI) 56254
Atlas_Id 46758
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 101533849 and ends at 101563344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRC2 (17q23.2) / RNF20 (9q31.1)RNF20 (9q31.1) / LAMA4 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF20   10062
Cards
Entrez_Gene (NCBI)RNF20  56254  ring finger protein 20
AliasesBRE1; BRE1A; hBRE1
GeneCards (Weizmann)RNF20
Ensembl hg19 (Hinxton)ENSG00000155827 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155827 [Gene_View]  chr9:101533849-101563344 [Contig_View]  RNF20 [Vega]
ICGC DataPortalENSG00000155827
TCGA cBioPortalRNF20
AceView (NCBI)RNF20
Genatlas (Paris)RNF20
WikiGenes56254
SOURCE (Princeton)RNF20
Genetics Home Reference (NIH)RNF20
Genomic and cartography
GoldenPath hg38 (UCSC)RNF20  -     chr9:101533849-101563344 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF20  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblRNF20 - 9q31.1 [CytoView hg19]  RNF20 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIRNF20 [Mapview hg19]  RNF20 [Mapview hg38]
OMIM607699   
Gene and transcription
Genbank (Entrez)AF265230 AF283791 AF305515 AK000389 AK000697
RefSeq transcript (Entrez)NM_019592
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF20
Cluster EST : UnigeneHs.729085 [ NCBI ]
CGAP (NCI)Hs.729085
Alternative Splicing GalleryENSG00000155827
Gene ExpressionRNF20 [ NCBI-GEO ]   RNF20 [ EBI - ARRAY_EXPRESS ]   RNF20 [ SEEK ]   RNF20 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56254
GTEX Portal (Tissue expression)RNF20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTR2
Splice isoforms : SwissVarQ5VTR2
PhosPhoSitePlusQ5VTR2
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF20
DMDM Disease mutations56254
Blocks (Seattle)RNF20
PDB (SRS)5TRB   
PDB (PDBSum)5TRB   
PDB (IMB)5TRB   
PDB (RSDB)5TRB   
Structural Biology KnowledgeBase5TRB   
SCOP (Structural Classification of Proteins)5TRB   
CATH (Classification of proteins structures)5TRB   
SuperfamilyQ5VTR2
Human Protein AtlasENSG00000155827
Peptide AtlasQ5VTR2
HPRD07410
IPIIPI00251559   IPI00946496   IPI00945638   IPI00945996   IPI00946858   IPI00947211   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTR2
IntAct (EBI)Q5VTR2
FunCoupENSG00000155827
BioGRIDRNF20
STRING (EMBL)RNF20
ZODIACRNF20
Ontologies - Pathways
QuickGOQ5VTR2
Ontology : AmiGOubiquitin ligase complex  protein polyubiquitination  p53 binding  chromatin binding  transcription coactivator activity  mRNA 3'-UTR binding  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  nucleolus  regulation of transcription, DNA-templated  ubiquitin-dependent protein catabolic process  regulation of mitotic cell cycle  zinc ion binding  histone monoubiquitination  protein ubiquitination  negative regulation of cell migration  positive regulation of histone methylation  ubiquitin protein ligase binding  HULC complex  histone H2B ubiquitination  histone binding  positive regulation of transcription, DNA-templated  negative regulation of mRNA polyadenylation  positive regulation of histone H2B ubiquitination  
Ontology : EGO-EBIubiquitin ligase complex  protein polyubiquitination  p53 binding  chromatin binding  transcription coactivator activity  mRNA 3'-UTR binding  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  nucleolus  regulation of transcription, DNA-templated  ubiquitin-dependent protein catabolic process  regulation of mitotic cell cycle  zinc ion binding  histone monoubiquitination  protein ubiquitination  negative regulation of cell migration  positive regulation of histone methylation  ubiquitin protein ligase binding  HULC complex  histone H2B ubiquitination  histone binding  positive regulation of transcription, DNA-templated  negative regulation of mRNA polyadenylation  positive regulation of histone H2B ubiquitination  
NDEx NetworkRNF20
Atlas of Cancer Signalling NetworkRNF20
Wikipedia pathwaysRNF20
Orthology - Evolution
OrthoDB56254
GeneTree (enSembl)ENSG00000155827
Phylogenetic Trees/Animal Genes : TreeFamRNF20
HOVERGENQ5VTR2
HOGENOMQ5VTR2
Homologs : HomoloGeneRNF20
Homology/Alignments : Family Browser (UCSC)RNF20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF20
dbVarRNF20
ClinVarRNF20
1000_GenomesRNF20 
Exome Variant ServerRNF20
ExAC (Exome Aggregation Consortium)RNF20 (select the gene name)
Genetic variants : HAPMAP56254
Genomic Variants (DGV)RNF20 [DGVbeta]
DECIPHERRNF20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF20 
Mutations
ICGC Data PortalRNF20 
TCGA Data PortalRNF20 
Broad Tumor PortalRNF20
OASIS PortalRNF20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF20
DgiDB (Drug Gene Interaction Database)RNF20
DoCM (Curated mutations)RNF20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF20 (select a term)
intoGenRNF20
Cancer3DRNF20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607699   
Orphanet
MedgenRNF20
Genetic Testing Registry RNF20
NextProtQ5VTR2 [Medical]
TSGene56254
GENETestsRNF20
Huge Navigator RNF20 [HugePedia]
snp3D : Map Gene to Disease56254
BioCentury BCIQRNF20
ClinGenRNF20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56254
Chemical/Pharm GKB GenePA34427
Clinical trialRNF20
Miscellaneous
canSAR (ICR)RNF20 (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF20
EVEXRNF20
GoPubMedRNF20
iHOPRNF20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:17 CEST 2017

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