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RNF207 (ring finger protein 207)

Identity

Alias_namesC1orf188
chromosome 1 open reading frame 188
Alias_symbol (synonym)FLJ46380
FLJ32096
Other alias
HGNC (Hugo) RNF207
LocusID (NCBI) 388591
Atlas_Id 72700
Location 1p36.31  [Link to chromosome band 1p36]
Location_base_pair Starts at 6206129 and ends at 6221299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CC2D1A (19p13.12) / RNF207 (1p36.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF207   32947
Cards
Entrez_Gene (NCBI)RNF207  388591  ring finger protein 207
AliasesC1orf188
GeneCards (Weizmann)RNF207
Ensembl hg19 (Hinxton)ENSG00000158286 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158286 [Gene_View]  chr1:6206129-6221299 [Contig_View]  RNF207 [Vega]
ICGC DataPortalENSG00000158286
TCGA cBioPortalRNF207
AceView (NCBI)RNF207
Genatlas (Paris)RNF207
WikiGenes388591
SOURCE (Princeton)RNF207
Genetics Home Reference (NIH)RNF207
Genomic and cartography
GoldenPath hg38 (UCSC)RNF207  -     chr1:6206129-6221299 +  1p36.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF207  -     1p36.31   [Description]    (hg19-Feb_2009)
EnsemblRNF207 - 1p36.31 [CytoView hg19]  RNF207 - 1p36.31 [CytoView hg38]
Mapping of homologs : NCBIRNF207 [Mapview hg19]  RNF207 [Mapview hg38]
OMIM616923   
Gene and transcription
Genbank (Entrez)AK056658 AK127700 AK128246 AK128450 AK294223
RefSeq transcript (Entrez)NM_173795 NM_207396
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF207
Cluster EST : UnigeneHs.716549 [ NCBI ]
CGAP (NCI)Hs.716549
Alternative Splicing GalleryENSG00000158286
Gene ExpressionRNF207 [ NCBI-GEO ]   RNF207 [ EBI - ARRAY_EXPRESS ]   RNF207 [ SEEK ]   RNF207 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF207 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388591
GTEX Portal (Tissue expression)RNF207
Human Protein AtlasENSG00000158286-RNF207 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRF8
Splice isoforms : SwissVarQ6ZRF8
PhosPhoSitePlusQ6ZRF8
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00643    pfam00097   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF207
DMDM Disease mutations388591
Blocks (Seattle)RNF207
SuperfamilyQ6ZRF8
Human Protein Atlas [tissue]ENSG00000158286-RNF207 [tissue]
Peptide AtlasQ6ZRF8
HPRD08119
IPIIPI00830073   IPI00397747   IPI00043236   IPI00867610   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRF8
IntAct (EBI)Q6ZRF8
FunCoupENSG00000158286
BioGRIDRNF207
STRING (EMBL)RNF207
ZODIACRNF207
Ontologies - Pathways
QuickGOQ6ZRF8
Ontology : AmiGOprotein binding  zinc ion binding  positive regulation of gene expression  Hsp70 protein binding  ion channel binding  perinuclear region of cytoplasm  chaperone binding  regulation of cardiac muscle contraction  cell-cell signaling involved in cardiac conduction  regulation of heart looping  positive regulation of delayed rectifier potassium channel activity  positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization  positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization  positive regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization  
Ontology : EGO-EBIprotein binding  zinc ion binding  positive regulation of gene expression  Hsp70 protein binding  ion channel binding  perinuclear region of cytoplasm  chaperone binding  regulation of cardiac muscle contraction  cell-cell signaling involved in cardiac conduction  regulation of heart looping  positive regulation of delayed rectifier potassium channel activity  positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization  positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization  positive regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization  
NDEx NetworkRNF207
Atlas of Cancer Signalling NetworkRNF207
Wikipedia pathwaysRNF207
Orthology - Evolution
OrthoDB388591
GeneTree (enSembl)ENSG00000158286
Phylogenetic Trees/Animal Genes : TreeFamRNF207
HOVERGENQ6ZRF8
HOGENOMQ6ZRF8
Homologs : HomoloGeneRNF207
Homology/Alignments : Family Browser (UCSC)RNF207
Gene fusions - Rearrangements
Tumor Fusion PortalRNF207
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF207 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF207
dbVarRNF207
ClinVarRNF207
1000_GenomesRNF207 
Exome Variant ServerRNF207
ExAC (Exome Aggregation Consortium)ENSG00000158286
GNOMAD BrowserENSG00000158286
Genetic variants : HAPMAP388591
Genomic Variants (DGV)RNF207 [DGVbeta]
DECIPHERRNF207 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF207 
Mutations
ICGC Data PortalRNF207 
TCGA Data PortalRNF207 
Broad Tumor PortalRNF207
OASIS PortalRNF207 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF207  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF207
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF207
DgiDB (Drug Gene Interaction Database)RNF207
DoCM (Curated mutations)RNF207 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF207 (select a term)
intoGenRNF207
Cancer3DRNF207(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616923   
Orphanet
DisGeNETRNF207
MedgenRNF207
Genetic Testing Registry RNF207
NextProtQ6ZRF8 [Medical]
TSGene388591
GENETestsRNF207
Target ValidationRNF207
Huge Navigator RNF207 [HugePedia]
snp3D : Map Gene to Disease388591
BioCentury BCIQRNF207
ClinGenRNF207
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388591
Chemical/Pharm GKB GenePA145148144
Clinical trialRNF207
Miscellaneous
canSAR (ICR)RNF207 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF207
EVEXRNF207
GoPubMedRNF207
iHOPRNF207
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:37 CET 2017

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