Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNF208 (ring finger protein 208)

Identity

Alias_symbol (synonym)DKFZP761H1710
Other alias-
HGNC (Hugo) RNF208
LocusID (NCBI) 727800
Atlas_Id 72701
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137220247 and ends at 137221323 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
STX16 (20q13.32) / RNF208 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF208   25420
Cards
Entrez_Gene (NCBI)RNF208  727800  ring finger protein 208
Aliases
GeneCards (Weizmann)RNF208
Ensembl hg19 (Hinxton)ENSG00000212864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212864 [Gene_View]  chr9:137220247-137221323 [Contig_View]  RNF208 [Vega]
ICGC DataPortalENSG00000212864
TCGA cBioPortalRNF208
AceView (NCBI)RNF208
Genatlas (Paris)RNF208
WikiGenes727800
SOURCE (Princeton)RNF208
Genetics Home Reference (NIH)RNF208
Genomic and cartography
GoldenPath hg38 (UCSC)RNF208  -     chr9:137220247-137221323 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF208  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblRNF208 - 9q34.3 [CytoView hg19]  RNF208 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIRNF208 [Mapview hg19]  RNF208 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF416715 AI880121 AL136540 BC016958 BX343138
RefSeq transcript (Entrez)NM_031297
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF208
Cluster EST : UnigeneHs.512767 [ NCBI ]
CGAP (NCI)Hs.512767
Alternative Splicing GalleryENSG00000212864
Gene ExpressionRNF208 [ NCBI-GEO ]   RNF208 [ EBI - ARRAY_EXPRESS ]   RNF208 [ SEEK ]   RNF208 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF208 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727800
GTEX Portal (Tissue expression)RNF208
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0X6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0X6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0X6
Splice isoforms : SwissVarQ9H0X6
PhosPhoSitePlusQ9H0X6
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF208
DMDM Disease mutations727800
Blocks (Seattle)RNF208
SuperfamilyQ9H0X6
Human Protein AtlasENSG00000212864
Peptide AtlasQ9H0X6
HPRD13182
IPIIPI00871183   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0X6
IntAct (EBI)Q9H0X6
FunCoupENSG00000212864
BioGRIDRNF208
STRING (EMBL)RNF208
ZODIACRNF208
Ontologies - Pathways
QuickGOQ9H0X6
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  nucleoplasm  cytosol  zinc ion binding  protein autoubiquitination  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  nucleoplasm  cytosol  zinc ion binding  protein autoubiquitination  
NDEx NetworkRNF208
Atlas of Cancer Signalling NetworkRNF208
Wikipedia pathwaysRNF208
Orthology - Evolution
OrthoDB727800
GeneTree (enSembl)ENSG00000212864
Phylogenetic Trees/Animal Genes : TreeFamRNF208
HOVERGENQ9H0X6
HOGENOMQ9H0X6
Homologs : HomoloGeneRNF208
Homology/Alignments : Family Browser (UCSC)RNF208
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF208 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF208
dbVarRNF208
ClinVarRNF208
1000_GenomesRNF208 
Exome Variant ServerRNF208
ExAC (Exome Aggregation Consortium)RNF208 (select the gene name)
Genetic variants : HAPMAP727800
Genomic Variants (DGV)RNF208 [DGVbeta]
DECIPHERRNF208 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF208 
Mutations
ICGC Data PortalRNF208 
TCGA Data PortalRNF208 
Broad Tumor PortalRNF208
OASIS PortalRNF208 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF208  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF208
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF208
DgiDB (Drug Gene Interaction Database)RNF208
DoCM (Curated mutations)RNF208 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF208 (select a term)
intoGenRNF208
Cancer3DRNF208(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF208
Genetic Testing Registry RNF208
NextProtQ9H0X6 [Medical]
TSGene727800
GENETestsRNF208
Target ValidationRNF208
Huge Navigator RNF208 [HugePedia]
snp3D : Map Gene to Disease727800
BioCentury BCIQRNF208
ClinGenRNF208
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD727800
Chemical/Pharm GKB GenePA162401649
Clinical trialRNF208
Miscellaneous
canSAR (ICR)RNF208 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF208
EVEXRNF208
GoPubMedRNF208
iHOPRNF208
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:36:26 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.