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RNF212B (ring finger protein 212B)

Identity

Alias_namesC14orf164
chromosome 14 open reading frame 164
Other alias
HGNC (Hugo) RNF212B
LocusID (NCBI) 100507650
Atlas_Id 72703
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 23237918 and ends at 23274285 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF212B   20438
Cards
Entrez_Gene (NCBI)RNF212B  100507650  ring finger protein 212B
AliasesC14orf164
GeneCards (Weizmann)RNF212B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:23237918-23274285 [Contig_View]  RNF212B [Vega]
TCGA cBioPortalRNF212B
AceView (NCBI)RNF212B
Genatlas (Paris)RNF212B
WikiGenes100507650
SOURCE (Princeton)RNF212B
Genetics Home Reference (NIH)RNF212B
Genomic and cartography
GoldenPath hg38 (UCSC)RNF212B  -     chr14:23237918-23274285 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF212B  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblRNF212B - 14q11.2 [CytoView hg19]  RNF212B - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIRNF212B [Mapview hg19]  RNF212B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001282322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF212B
Gene ExpressionRNF212B [ NCBI-GEO ]   RNF212B [ EBI - ARRAY_EXPRESS ]   RNF212B [ SEEK ]   RNF212B [ MEM ]
Gene Expression Viewer (FireBrowse)RNF212B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507650
GTEX Portal (Tissue expression)RNF212B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTL3
Splice isoforms : SwissVarA8MTL3
PhosPhoSitePlusA8MTL3
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)   
Domains : Interpro (EBI)Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF212B
DMDM Disease mutations100507650
Blocks (Seattle)RNF212B
SuperfamilyA8MTL3
Peptide AtlasA8MTL3
IPIIPI00982409   
Protein Interaction databases
DIP (DOE-UCLA)A8MTL3
IntAct (EBI)A8MTL3
BioGRIDRNF212B
STRING (EMBL)RNF212B
ZODIACRNF212B
Ontologies - Pathways
QuickGOA8MTL3
Ontology : AmiGOsynaptonemal complex  synapsis  protein sumoylation  SUMO transferase activity  metal ion binding  
Ontology : EGO-EBIsynaptonemal complex  synapsis  protein sumoylation  SUMO transferase activity  metal ion binding  
NDEx NetworkRNF212B
Atlas of Cancer Signalling NetworkRNF212B
Wikipedia pathwaysRNF212B
Orthology - Evolution
OrthoDB100507650
Phylogenetic Trees/Animal Genes : TreeFamRNF212B
HOVERGENA8MTL3
HOGENOMA8MTL3
Homologs : HomoloGeneRNF212B
Homology/Alignments : Family Browser (UCSC)RNF212B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF212B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF212B
dbVarRNF212B
ClinVarRNF212B
1000_GenomesRNF212B 
Exome Variant ServerRNF212B
ExAC (Exome Aggregation Consortium)RNF212B (select the gene name)
Genetic variants : HAPMAP100507650
Genomic Variants (DGV)RNF212B [DGVbeta]
DECIPHERRNF212B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF212B 
Mutations
ICGC Data PortalRNF212B 
TCGA Data PortalRNF212B 
Broad Tumor PortalRNF212B
OASIS PortalRNF212B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRNF212B
BioMutasearch RNF212B
DgiDB (Drug Gene Interaction Database)RNF212B
DoCM (Curated mutations)RNF212B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF212B (select a term)
intoGenRNF212B
Cancer3DRNF212B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF212B
Genetic Testing Registry RNF212B
NextProtA8MTL3 [Medical]
TSGene100507650
GENETestsRNF212B
Target ValidationRNF212B
Huge Navigator RNF212B [HugePedia]
snp3D : Map Gene to Disease100507650
BioCentury BCIQRNF212B
ClinGenRNF212B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507650
Chemical/Pharm GKB GenePA134863571
Clinical trialRNF212B
Miscellaneous
canSAR (ICR)RNF212B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF212B
EVEXRNF212B
GoPubMedRNF212B
iHOPRNF212B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:54 CEST 2017

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