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RNF214 (ring finger protein 214)

Identity

Alias_symbol (synonym)DKFZp547C195
Other alias-
HGNC (Hugo) RNF214
LocusID (NCBI) 257160
Atlas_Id 54586
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 117232736 and ends at 117285688 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF214 (11q23.3) / KMT2A (11q23.3)RNF214 (11q23.3) / PAFAH1B2 (11q23.3)RNF214 (11q23.3) / TSN (2q14.3)
RNF214 11q23.3 / PAFAH1B2 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF214   25335
Cards
Entrez_Gene (NCBI)RNF214  257160  ring finger protein 214
Aliases
GeneCards (Weizmann)RNF214
Ensembl hg19 (Hinxton)ENSG00000167257 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167257 [Gene_View]  chr11:117232736-117285688 [Contig_View]  RNF214 [Vega]
ICGC DataPortalENSG00000167257
TCGA cBioPortalRNF214
AceView (NCBI)RNF214
Genatlas (Paris)RNF214
WikiGenes257160
SOURCE (Princeton)RNF214
Genetics Home Reference (NIH)RNF214
Genomic and cartography
GoldenPath hg38 (UCSC)RNF214  -     chr11:117232736-117285688 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF214  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblRNF214 - 11q23.3 [CytoView hg19]  RNF214 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIRNF214 [Mapview hg19]  RNF214 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK298923 AK300160 AL834448 BC031347 BC064581
RefSeq transcript (Entrez)NM_001077239 NM_001278249 NM_207343
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF214
Cluster EST : UnigeneHs.591934 [ NCBI ]
CGAP (NCI)Hs.591934
Alternative Splicing GalleryENSG00000167257
Gene ExpressionRNF214 [ NCBI-GEO ]   RNF214 [ EBI - ARRAY_EXPRESS ]   RNF214 [ SEEK ]   RNF214 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF214 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257160
GTEX Portal (Tissue expression)RNF214
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND24
Splice isoforms : SwissVarQ8ND24
PhosPhoSitePlusQ8ND24
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF214
DMDM Disease mutations257160
Blocks (Seattle)RNF214
SuperfamilyQ8ND24
Human Protein AtlasENSG00000167257
Peptide AtlasQ8ND24
HPRD16815
IPIIPI00742996   IPI00976003   IPI00908990   IPI00979782   IPI00976665   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND24
IntAct (EBI)Q8ND24
FunCoupENSG00000167257
BioGRIDRNF214
STRING (EMBL)RNF214
ZODIACRNF214
Ontologies - Pathways
QuickGOQ8ND24
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkRNF214
Atlas of Cancer Signalling NetworkRNF214
Wikipedia pathwaysRNF214
Orthology - Evolution
OrthoDB257160
GeneTree (enSembl)ENSG00000167257
Phylogenetic Trees/Animal Genes : TreeFamRNF214
HOVERGENQ8ND24
HOGENOMQ8ND24
Homologs : HomoloGeneRNF214
Homology/Alignments : Family Browser (UCSC)RNF214
Gene fusions - Rearrangements
Fusion : MitelmanRNF214/PAFAH1B2 [11q23.3/11q23.3]  
Fusion: TCGARNF214 11q23.3 PAFAH1B2 11q23.3 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF214 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF214
dbVarRNF214
ClinVarRNF214
1000_GenomesRNF214 
Exome Variant ServerRNF214
ExAC (Exome Aggregation Consortium)RNF214 (select the gene name)
Genetic variants : HAPMAP257160
Genomic Variants (DGV)RNF214 [DGVbeta]
DECIPHERRNF214 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF214 
Mutations
ICGC Data PortalRNF214 
TCGA Data PortalRNF214 
Broad Tumor PortalRNF214
OASIS PortalRNF214 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF214  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF214
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF214
DgiDB (Drug Gene Interaction Database)RNF214
DoCM (Curated mutations)RNF214 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF214 (select a term)
intoGenRNF214
Cancer3DRNF214(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF214
Genetic Testing Registry RNF214
NextProtQ8ND24 [Medical]
TSGene257160
GENETestsRNF214
Target ValidationRNF214
Huge Navigator RNF214 [HugePedia]
snp3D : Map Gene to Disease257160
BioCentury BCIQRNF214
ClinGenRNF214
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257160
Chemical/Pharm GKB GenePA162401772
Clinical trialRNF214
Miscellaneous
canSAR (ICR)RNF214 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF214
EVEXRNF214
GoPubMedRNF214
iHOPRNF214
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:29:08 CEST 2017

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