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RNF216P1 (ring finger protein 216 pseudogene 1)

Identity

Alias_namesRNF216L
ring finger protein 216-like
Other aliashCG2040556
HGNC (Hugo) RNF216P1
LocusID (NCBI) 441191
Atlas_Id 72706
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 4973985 and ends at 4998169 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF216P1   33610
Cards
Entrez_Gene (NCBI)RNF216P1  441191  ring finger protein 216 pseudogene 1
AliasesRNF216L; hCG2040556
GeneCards (Weizmann)RNF216P1
Ensembl hg19 (Hinxton)ENSG00000196204 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196204 [Gene_View]  chr7:4973985-4998169 [Contig_View]  RNF216P1 [Vega]
ICGC DataPortalENSG00000196204
TCGA cBioPortalRNF216P1
AceView (NCBI)RNF216P1
Genatlas (Paris)RNF216P1
WikiGenes441191
SOURCE (Princeton)RNF216P1
Genetics Home Reference (NIH)RNF216P1
Genomic and cartography
GoldenPath hg38 (UCSC)RNF216P1  -     chr7:4973985-4998169 +  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF216P1  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblRNF216P1 - 7p22.1 [CytoView hg19]  RNF216P1 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIRNF216P1 [Mapview hg19]  RNF216P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124529 AK303831 AK308526 AK309798 AK311517
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF216P1
Cluster EST : UnigeneHs.520636 [ NCBI ]
CGAP (NCI)Hs.520636
Alternative Splicing GalleryENSG00000196204
Gene ExpressionRNF216P1 [ NCBI-GEO ]   RNF216P1 [ EBI - ARRAY_EXPRESS ]   RNF216P1 [ SEEK ]   RNF216P1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF216P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441191
GTEX Portal (Tissue expression)RNF216P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUR6
Splice isoforms : SwissVarQ6NUR6
PhosPhoSitePlusQ6NUR6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF216P1
DMDM Disease mutations441191
Blocks (Seattle)RNF216P1
SuperfamilyQ6NUR6
Human Protein AtlasENSG00000196204
Peptide AtlasQ6NUR6
IPIIPI00929620   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUR6
IntAct (EBI)Q6NUR6
FunCoupENSG00000196204
BioGRIDRNF216P1
STRING (EMBL)RNF216P1
ZODIACRNF216P1
Ontologies - Pathways
QuickGOQ6NUR6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRNF216P1
Atlas of Cancer Signalling NetworkRNF216P1
Wikipedia pathwaysRNF216P1
Orthology - Evolution
OrthoDB441191
GeneTree (enSembl)ENSG00000196204
Phylogenetic Trees/Animal Genes : TreeFamRNF216P1
HOVERGENQ6NUR6
HOGENOMQ6NUR6
Homologs : HomoloGeneRNF216P1
Homology/Alignments : Family Browser (UCSC)RNF216P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF216P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF216P1
dbVarRNF216P1
ClinVarRNF216P1
1000_GenomesRNF216P1 
Exome Variant ServerRNF216P1
ExAC (Exome Aggregation Consortium)RNF216P1 (select the gene name)
Genetic variants : HAPMAP441191
Genomic Variants (DGV)RNF216P1 [DGVbeta]
DECIPHERRNF216P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF216P1 
Mutations
ICGC Data PortalRNF216P1 
TCGA Data PortalRNF216P1 
Broad Tumor PortalRNF216P1
OASIS PortalRNF216P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRNF216P1
BioMutasearch RNF216P1
DgiDB (Drug Gene Interaction Database)RNF216P1
DoCM (Curated mutations)RNF216P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF216P1 (select a term)
intoGenRNF216P1
Cancer3DRNF216P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF216P1
Genetic Testing Registry RNF216P1
NextProtQ6NUR6 [Medical]
TSGene441191
GENETestsRNF216P1
Target ValidationRNF216P1
Huge Navigator RNF216P1 [HugePedia]
snp3D : Map Gene to Disease441191
BioCentury BCIQRNF216P1
ClinGenRNF216P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441191
Clinical trialRNF216P1
Miscellaneous
canSAR (ICR)RNF216P1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF216P1
EVEXRNF216P1
GoPubMedRNF216P1
iHOPRNF216P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:55 CEST 2017

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