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RNF219 (ring finger protein 219)

Identity

Alias_namesC13orf7
chromosome 13 open reading frame 7
Alias_symbol (synonym)FLJ13449
Other alias
HGNC (Hugo) RNF219
LocusID (NCBI) 79596
Atlas_Id 72708
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 78614286 and ends at 78659179 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MYCBP2 (13q22.3) / RNF219 (13q31.1)RNF219 (13q31.1) / AKAP11 (13q14.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF219   20308
Cards
Entrez_Gene (NCBI)RNF219  79596  ring finger protein 219
AliasesC13orf7
GeneCards (Weizmann)RNF219
Ensembl hg19 (Hinxton)ENSG00000152193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152193 [Gene_View]  chr13:78614286-78659179 [Contig_View]  RNF219 [Vega]
ICGC DataPortalENSG00000152193
TCGA cBioPortalRNF219
AceView (NCBI)RNF219
Genatlas (Paris)RNF219
WikiGenes79596
SOURCE (Princeton)RNF219
Genetics Home Reference (NIH)RNF219
Genomic and cartography
GoldenPath hg38 (UCSC)RNF219  -     chr13:78614286-78659179 -  13q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF219  -     13q31.1   [Description]    (hg19-Feb_2009)
EnsemblRNF219 - 13q31.1 [CytoView hg19]  RNF219 - 13q31.1 [CytoView hg38]
Mapping of homologs : NCBIRNF219 [Mapview hg19]  RNF219 [Mapview hg38]
OMIM615906   
Gene and transcription
Genbank (Entrez)AK023511 AK098640 AL136651 BC028586 BC136764
RefSeq transcript (Entrez)NM_024546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF219
Cluster EST : UnigeneHs.567576 [ NCBI ]
CGAP (NCI)Hs.567576
Alternative Splicing GalleryENSG00000152193
Gene ExpressionRNF219 [ NCBI-GEO ]   RNF219 [ EBI - ARRAY_EXPRESS ]   RNF219 [ SEEK ]   RNF219 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF219 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79596
GTEX Portal (Tissue expression)RNF219
Human Protein AtlasENSG00000152193-RNF219 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W0B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W0B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W0B1
Splice isoforms : SwissVarQ5W0B1
PhosPhoSitePlusQ5W0B1
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF219
DMDM Disease mutations79596
Blocks (Seattle)RNF219
SuperfamilyQ5W0B1
Human Protein Atlas [tissue]ENSG00000152193-RNF219 [tissue]
Peptide AtlasQ5W0B1
HPRD12619
IPIIPI00465370   
Protein Interaction databases
DIP (DOE-UCLA)Q5W0B1
IntAct (EBI)Q5W0B1
FunCoupENSG00000152193
BioGRIDRNF219
STRING (EMBL)RNF219
ZODIACRNF219
Ontologies - Pathways
QuickGOQ5W0B1
Ontology : AmiGOprotein binding  zinc ion binding  
Ontology : EGO-EBIprotein binding  zinc ion binding  
NDEx NetworkRNF219
Atlas of Cancer Signalling NetworkRNF219
Wikipedia pathwaysRNF219
Orthology - Evolution
OrthoDB79596
GeneTree (enSembl)ENSG00000152193
Phylogenetic Trees/Animal Genes : TreeFamRNF219
HOVERGENQ5W0B1
HOGENOMQ5W0B1
Homologs : HomoloGeneRNF219
Homology/Alignments : Family Browser (UCSC)RNF219
Gene fusions - Rearrangements
Tumor Fusion PortalRNF219
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF219 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF219
dbVarRNF219
ClinVarRNF219
1000_GenomesRNF219 
Exome Variant ServerRNF219
ExAC (Exome Aggregation Consortium)ENSG00000152193
GNOMAD BrowserENSG00000152193
Genetic variants : HAPMAP79596
Genomic Variants (DGV)RNF219 [DGVbeta]
DECIPHERRNF219 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF219 
Mutations
ICGC Data PortalRNF219 
TCGA Data PortalRNF219 
Broad Tumor PortalRNF219
OASIS PortalRNF219 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF219  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF219
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF219
DgiDB (Drug Gene Interaction Database)RNF219
DoCM (Curated mutations)RNF219 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF219 (select a term)
intoGenRNF219
Cancer3DRNF219(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615906   
Orphanet
DisGeNETRNF219
MedgenRNF219
Genetic Testing Registry RNF219
NextProtQ5W0B1 [Medical]
TSGene79596
GENETestsRNF219
Target ValidationRNF219
Huge Navigator RNF219 [HugePedia]
snp3D : Map Gene to Disease79596
BioCentury BCIQRNF219
ClinGenRNF219
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79596
Chemical/Pharm GKB GenePA162401869
Clinical trialRNF219
Miscellaneous
canSAR (ICR)RNF219 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF219
EVEXRNF219
GoPubMedRNF219
iHOPRNF219
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:28:51 CET 2017

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