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RNF220 (ring finger protein 220)

Identity

Alias_namesC1orf164
chromosome 1 open reading frame 164
Alias_symbol (synonym)FLJ10597
Other alias
HGNC (Hugo) RNF220
LocusID (NCBI) 55182
Atlas_Id 72710
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44405160 and ends at 44651724 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABL1 (9q34.12) / RNF220 (1p34.1)HMP19 (5q35.2) / RNF220 (1p34.1)RNF220 (1p34.1) / CTSZ (20q13.32)
RNF220 (1p34.1) / EP300 (22q13.2)RNF220 (1p34.1) / PTMS (12p13.31)RNF220 (1p34.1) / QSOX1 (1q25.2)
RNF220 (1p34.1) / SAP30BP (17q25.1)RNF220 (1p34.1) / abParts ()SLC25A26 (3p14.1) / RNF220 (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF220   25552
Cards
Entrez_Gene (NCBI)RNF220  55182  ring finger protein 220
AliasesC1orf164
GeneCards (Weizmann)RNF220
Ensembl hg19 (Hinxton)ENSG00000187147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187147 [Gene_View]  chr1:44405160-44651724 [Contig_View]  RNF220 [Vega]
ICGC DataPortalENSG00000187147
TCGA cBioPortalRNF220
AceView (NCBI)RNF220
Genatlas (Paris)RNF220
WikiGenes55182
SOURCE (Princeton)RNF220
Genetics Home Reference (NIH)RNF220
Genomic and cartography
GoldenPath hg38 (UCSC)RNF220  -     chr1:44405160-44651724 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF220  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblRNF220 - 1p34.1 [CytoView hg19]  RNF220 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIRNF220 [Mapview hg19]  RNF220 [Mapview hg38]
OMIM616136   
Gene and transcription
Genbank (Entrez)AF151080 AK001459 AK025744 AK056424 AK124639
RefSeq transcript (Entrez)NM_001319956 NM_001319957 NM_018150
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF220
Cluster EST : UnigeneHs.456557 [ NCBI ]
CGAP (NCI)Hs.456557
Alternative Splicing GalleryENSG00000187147
Gene ExpressionRNF220 [ NCBI-GEO ]   RNF220 [ EBI - ARRAY_EXPRESS ]   RNF220 [ SEEK ]   RNF220 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF220 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55182
GTEX Portal (Tissue expression)RNF220
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTB9
Splice isoforms : SwissVarQ5VTB9
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ5VTB9
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RNF220_mid    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)RNF220 (PF15926)   
Domain families : Pfam (NCBI)pfam15926   
Conserved Domain (NCBI)RNF220
DMDM Disease mutations55182
Blocks (Seattle)RNF220
SuperfamilyQ5VTB9
Human Protein AtlasENSG00000187147
Peptide AtlasQ5VTB9
HPRD13336
IPIIPI00514161   IPI00909138   IPI00479128   IPI00477181   IPI00827709   IPI00479367   IPI00452809   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTB9
IntAct (EBI)Q5VTB9
FunCoupENSG00000187147
BioGRIDRNF220
STRING (EMBL)RNF220
ZODIACRNF220
Ontologies - Pathways
QuickGOQ5VTB9
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  cytoplasm  zinc ion binding  protein ubiquitination  protein autoubiquitination  ubiquitin protein ligase activity  positive regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  cytoplasm  zinc ion binding  protein ubiquitination  protein autoubiquitination  ubiquitin protein ligase activity  positive regulation of canonical Wnt signaling pathway  
NDEx NetworkRNF220
Atlas of Cancer Signalling NetworkRNF220
Wikipedia pathwaysRNF220
Orthology - Evolution
OrthoDB55182
GeneTree (enSembl)ENSG00000187147
Phylogenetic Trees/Animal Genes : TreeFamRNF220
HOVERGENQ5VTB9
HOGENOMQ5VTB9
Homologs : HomoloGeneRNF220
Homology/Alignments : Family Browser (UCSC)RNF220
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF220 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF220
dbVarRNF220
ClinVarRNF220
1000_GenomesRNF220 
Exome Variant ServerRNF220
ExAC (Exome Aggregation Consortium)RNF220 (select the gene name)
Genetic variants : HAPMAP55182
Genomic Variants (DGV)RNF220 [DGVbeta]
DECIPHERRNF220 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF220 
Mutations
ICGC Data PortalRNF220 
TCGA Data PortalRNF220 
Broad Tumor PortalRNF220
OASIS PortalRNF220 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF220  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF220
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF220
DgiDB (Drug Gene Interaction Database)RNF220
DoCM (Curated mutations)RNF220 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF220 (select a term)
intoGenRNF220
Cancer3DRNF220(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616136   
Orphanet
MedgenRNF220
Genetic Testing Registry RNF220
NextProtQ5VTB9 [Medical]
TSGene55182
GENETestsRNF220
Target ValidationRNF220
Huge Navigator RNF220 [HugePedia]
snp3D : Map Gene to Disease55182
BioCentury BCIQRNF220
ClinGenRNF220
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55182
Chemical/Pharm GKB GenePA162401886
Clinical trialRNF220
Miscellaneous
canSAR (ICR)RNF220 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF220
EVEXRNF220
GoPubMedRNF220
iHOPRNF220
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:56 CEST 2017

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