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RNF222 (ring finger protein 222)

Identity

Other alias-
HGNC (Hugo) RNF222
LocusID (NCBI) 643904
Atlas_Id 72711
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8390705 and ends at 8397826 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF222   34517
Cards
Entrez_Gene (NCBI)RNF222  643904  ring finger protein 222
Aliases
GeneCards (Weizmann)RNF222
Ensembl hg19 (Hinxton)ENSG00000189051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189051 [Gene_View]  chr17:8390705-8397826 [Contig_View]  RNF222 [Vega]
ICGC DataPortalENSG00000189051
TCGA cBioPortalRNF222
AceView (NCBI)RNF222
Genatlas (Paris)RNF222
WikiGenes643904
SOURCE (Princeton)RNF222
Genetics Home Reference (NIH)RNF222
Genomic and cartography
GoldenPath hg38 (UCSC)RNF222  -     chr17:8390705-8397826 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF222  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblRNF222 - 17p13.1 [CytoView hg19]  RNF222 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIRNF222 [Mapview hg19]  RNF222 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CA944854
RefSeq transcript (Entrez)NM_001146684
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF222
Cluster EST : UnigeneHs.526550 [ NCBI ]
CGAP (NCI)Hs.526550
Alternative Splicing GalleryENSG00000189051
Gene ExpressionRNF222 [ NCBI-GEO ]   RNF222 [ EBI - ARRAY_EXPRESS ]   RNF222 [ SEEK ]   RNF222 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF222 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643904
GTEX Portal (Tissue expression)RNF222
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCQ9
Splice isoforms : SwissVarA6NCQ9
PhosPhoSitePlusA6NCQ9
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf-RING_LisH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam13445   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF222
DMDM Disease mutations643904
Blocks (Seattle)RNF222
SuperfamilyA6NCQ9
Human Protein AtlasENSG00000189051
Peptide AtlasA6NCQ9
IPIIPI00375992   
Protein Interaction databases
DIP (DOE-UCLA)A6NCQ9
IntAct (EBI)A6NCQ9
FunCoupENSG00000189051
BioGRIDRNF222
STRING (EMBL)RNF222
ZODIACRNF222
Ontologies - Pathways
QuickGOA6NCQ9
Ontology : AmiGOzinc ion binding  integral component of membrane  protein ubiquitination  negative regulation of protein sumoylation  SUMO-targeted ubiquitin ligase complex  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  protein ubiquitination  negative regulation of protein sumoylation  SUMO-targeted ubiquitin ligase complex  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkRNF222
Atlas of Cancer Signalling NetworkRNF222
Wikipedia pathwaysRNF222
Orthology - Evolution
OrthoDB643904
GeneTree (enSembl)ENSG00000189051
Phylogenetic Trees/Animal Genes : TreeFamRNF222
HOVERGENA6NCQ9
HOGENOMA6NCQ9
Homologs : HomoloGeneRNF222
Homology/Alignments : Family Browser (UCSC)RNF222
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF222 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF222
dbVarRNF222
ClinVarRNF222
1000_GenomesRNF222 
Exome Variant ServerRNF222
ExAC (Exome Aggregation Consortium)RNF222 (select the gene name)
Genetic variants : HAPMAP643904
Genomic Variants (DGV)RNF222 [DGVbeta]
DECIPHERRNF222 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF222 
Mutations
ICGC Data PortalRNF222 
TCGA Data PortalRNF222 
Broad Tumor PortalRNF222
OASIS PortalRNF222 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF222  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF222
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF222
DgiDB (Drug Gene Interaction Database)RNF222
DoCM (Curated mutations)RNF222 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF222 (select a term)
intoGenRNF222
Cancer3DRNF222(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF222
Genetic Testing Registry RNF222
NextProtA6NCQ9 [Medical]
TSGene643904
GENETestsRNF222
Target ValidationRNF222
Huge Navigator RNF222 [HugePedia]
snp3D : Map Gene to Disease643904
BioCentury BCIQRNF222
ClinGenRNF222
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643904
Chemical/Pharm GKB GenePA164725453
Clinical trialRNF222
Miscellaneous
canSAR (ICR)RNF222 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF222
EVEXRNF222
GoPubMedRNF222
iHOPRNF222
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:27 CEST 2017

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