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RNF223 (ring finger protein 223)

Identity

Other alias-
HGNC (Hugo) RNF223
LocusID (NCBI) 401934
Atlas_Id 72712
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1071746 and ends at 1074307 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF223   40020
Cards
Entrez_Gene (NCBI)RNF223  401934  ring finger protein 223
Aliases
GeneCards (Weizmann)RNF223
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:1071746-1074307 [Contig_View]  RNF223 [Vega]
TCGA cBioPortalRNF223
AceView (NCBI)RNF223
Genatlas (Paris)RNF223
WikiGenes401934
SOURCE (Princeton)RNF223
Genetics Home Reference (NIH)RNF223
Genomic and cartography
GoldenPath hg38 (UCSC)RNF223  -     chr1:1071746-1074307 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF223  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblRNF223 - 1p36.33 [CytoView hg19]  RNF223 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIRNF223 [Mapview hg19]  RNF223 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK296576
RefSeq transcript (Entrez)NM_001205252
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF223
Cluster EST : UnigeneHs.568137 [ NCBI ]
CGAP (NCI)Hs.568137
Gene ExpressionRNF223 [ NCBI-GEO ]   RNF223 [ EBI - ARRAY_EXPRESS ]   RNF223 [ SEEK ]   RNF223 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF223 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401934
GTEX Portal (Tissue expression)RNF223
Protein : pattern, domain, 3D structure
UniProt/SwissProtE7ERA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE7ERA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE7ERA6
Splice isoforms : SwissVarE7ERA6
PhosPhoSitePlusE7ERA6
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF223
DMDM Disease mutations401934
Blocks (Seattle)RNF223
SuperfamilyE7ERA6
Peptide AtlasE7ERA6
IPIIPI00908418   
Protein Interaction databases
DIP (DOE-UCLA)E7ERA6
IntAct (EBI)E7ERA6
BioGRIDRNF223
STRING (EMBL)RNF223
ZODIACRNF223
Ontologies - Pathways
QuickGOE7ERA6
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkRNF223
Atlas of Cancer Signalling NetworkRNF223
Wikipedia pathwaysRNF223
Orthology - Evolution
OrthoDB401934
Phylogenetic Trees/Animal Genes : TreeFamRNF223
HOVERGENE7ERA6
HOGENOME7ERA6
Homologs : HomoloGeneRNF223
Homology/Alignments : Family Browser (UCSC)RNF223
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF223 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF223
dbVarRNF223
ClinVarRNF223
1000_GenomesRNF223 
Exome Variant ServerRNF223
ExAC (Exome Aggregation Consortium)RNF223 (select the gene name)
Genetic variants : HAPMAP401934
Genomic Variants (DGV)RNF223 [DGVbeta]
DECIPHERRNF223 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF223 
Mutations
ICGC Data PortalRNF223 
TCGA Data PortalRNF223 
Broad Tumor PortalRNF223
OASIS PortalRNF223 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF223  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF223
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF223
DgiDB (Drug Gene Interaction Database)RNF223
DoCM (Curated mutations)RNF223 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF223 (select a term)
intoGenRNF223
Cancer3DRNF223(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF223
Genetic Testing Registry RNF223
NextProtE7ERA6 [Medical]
TSGene401934
GENETestsRNF223
Target ValidationRNF223
Huge Navigator RNF223 [HugePedia]
snp3D : Map Gene to Disease401934
BioCentury BCIQRNF223
ClinGenRNF223
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401934
Chemical/Pharm GKB GenePA166049043
Clinical trialRNF223
Miscellaneous
canSAR (ICR)RNF223 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF223
EVEXRNF223
GoPubMedRNF223
iHOPRNF223
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:56 CEST 2017

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