Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNF224 (ring finger protein 224)

Identity

Other alias-
HGNC (Hugo) RNF224
LocusID (NCBI) 643596
Atlas_Id 72713
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137227566 and ends at 137229638 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF224   41912
Cards
Entrez_Gene (NCBI)RNF224  643596  ring finger protein 224
Aliases
GeneCards (Weizmann)RNF224
Ensembl hg19 (Hinxton)ENSG00000233198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233198 [Gene_View]  chr9:137227566-137229638 [Contig_View]  RNF224 [Vega]
ICGC DataPortalENSG00000233198
TCGA cBioPortalRNF224
AceView (NCBI)RNF224
Genatlas (Paris)RNF224
WikiGenes643596
SOURCE (Princeton)RNF224
Genetics Home Reference (NIH)RNF224
Genomic and cartography
GoldenPath hg38 (UCSC)RNF224  -     chr9:137227566-137229638 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF224  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblRNF224 - 9q34.3 [CytoView hg19]  RNF224 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIRNF224 [Mapview hg19]  RNF224 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW236719 BM921684
RefSeq transcript (Entrez)NM_001190228
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF224
Cluster EST : UnigeneHs.730186 [ NCBI ]
CGAP (NCI)Hs.730186
Alternative Splicing GalleryENSG00000233198
Gene ExpressionRNF224 [ NCBI-GEO ]   RNF224 [ EBI - ARRAY_EXPRESS ]   RNF224 [ SEEK ]   RNF224 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF224 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643596
GTEX Portal (Tissue expression)RNF224
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DH78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DH78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DH78
Splice isoforms : SwissVarP0DH78
PhosPhoSitePlusP0DH78
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf-RING_LisH    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam13445   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF224
DMDM Disease mutations643596
Blocks (Seattle)RNF224
SuperfamilyP0DH78
Human Protein AtlasENSG00000233198
Peptide AtlasP0DH78
IPIIPI00941762   
Protein Interaction databases
DIP (DOE-UCLA)P0DH78
IntAct (EBI)P0DH78
FunCoupENSG00000233198
BioGRIDRNF224
STRING (EMBL)RNF224
ZODIACRNF224
Ontologies - Pathways
QuickGOP0DH78
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkRNF224
Atlas of Cancer Signalling NetworkRNF224
Wikipedia pathwaysRNF224
Orthology - Evolution
OrthoDB643596
GeneTree (enSembl)ENSG00000233198
Phylogenetic Trees/Animal Genes : TreeFamRNF224
HOVERGENP0DH78
HOGENOMP0DH78
Homologs : HomoloGeneRNF224
Homology/Alignments : Family Browser (UCSC)RNF224
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF224 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF224
dbVarRNF224
ClinVarRNF224
1000_GenomesRNF224 
Exome Variant ServerRNF224
ExAC (Exome Aggregation Consortium)RNF224 (select the gene name)
Genetic variants : HAPMAP643596
Genomic Variants (DGV)RNF224 [DGVbeta]
DECIPHERRNF224 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF224 
Mutations
ICGC Data PortalRNF224 
TCGA Data PortalRNF224 
Broad Tumor PortalRNF224
OASIS PortalRNF224 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF224  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF224
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF224
DgiDB (Drug Gene Interaction Database)RNF224
DoCM (Curated mutations)RNF224 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF224 (select a term)
intoGenRNF224
Cancer3DRNF224(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF224
Genetic Testing Registry RNF224
NextProtP0DH78 [Medical]
TSGene643596
GENETestsRNF224
Huge Navigator RNF224 [HugePedia]
snp3D : Map Gene to Disease643596
BioCentury BCIQRNF224
ClinGenRNF224
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643596
Chemical/Pharm GKB GenePA166049078
Clinical trialRNF224
Miscellaneous
canSAR (ICR)RNF224 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF224
EVEXRNF224
GoPubMedRNF224
iHOPRNF224
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:51:15 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.