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RNF225 (ring finger protein 225)

Identity

Other alias-
HGNC (Hugo) RNF225
LocusID (NCBI) 646862
Atlas_Id 72714
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58396090 and ends at 58397079 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF225   51249
Cards
Entrez_Gene (NCBI)RNF225  646862  ring finger protein 225
Aliases
GeneCards (Weizmann)RNF225
Ensembl hg19 (Hinxton)ENSG00000269855 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269855 [Gene_View]  chr19:58396090-58397079 [Contig_View]  RNF225 [Vega]
ICGC DataPortalENSG00000269855
TCGA cBioPortalRNF225
AceView (NCBI)RNF225
Genatlas (Paris)RNF225
WikiGenes646862
SOURCE (Princeton)RNF225
Genetics Home Reference (NIH)RNF225
Genomic and cartography
GoldenPath hg38 (UCSC)RNF225  -     chr19:58396090-58397079 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF225  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblRNF225 - 19q13.43 [CytoView hg19]  RNF225 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIRNF225 [Mapview hg19]  RNF225 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001195135
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF225
Cluster EST : UnigeneHs.728121 [ NCBI ]
CGAP (NCI)Hs.728121
Alternative Splicing GalleryENSG00000269855
Gene ExpressionRNF225 [ NCBI-GEO ]   RNF225 [ EBI - ARRAY_EXPRESS ]   RNF225 [ SEEK ]   RNF225 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF225 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646862
GTEX Portal (Tissue expression)RNF225
Protein : pattern, domain, 3D structure
UniProt/SwissProtM0QZC1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtM0QZC1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProM0QZC1
Splice isoforms : SwissVarM0QZC1
PhosPhoSitePlusM0QZC1
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF225
DMDM Disease mutations646862
Blocks (Seattle)RNF225
SuperfamilyM0QZC1
Human Protein AtlasENSG00000269855
Peptide AtlasM0QZC1
IPIIPI00647485   
Protein Interaction databases
DIP (DOE-UCLA)M0QZC1
IntAct (EBI)M0QZC1
FunCoupENSG00000269855
BioGRIDRNF225
STRING (EMBL)RNF225
ZODIACRNF225
Ontologies - Pathways
QuickGOM0QZC1
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkRNF225
Atlas of Cancer Signalling NetworkRNF225
Wikipedia pathwaysRNF225
Orthology - Evolution
OrthoDB646862
GeneTree (enSembl)ENSG00000269855
Phylogenetic Trees/Animal Genes : TreeFamRNF225
HOVERGENM0QZC1
HOGENOMM0QZC1
Homologs : HomoloGeneRNF225
Homology/Alignments : Family Browser (UCSC)RNF225
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF225 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF225
dbVarRNF225
ClinVarRNF225
1000_GenomesRNF225 
Exome Variant ServerRNF225
ExAC (Exome Aggregation Consortium)RNF225 (select the gene name)
Genetic variants : HAPMAP646862
Genomic Variants (DGV)RNF225 [DGVbeta]
DECIPHERRNF225 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF225 
Mutations
ICGC Data PortalRNF225 
TCGA Data PortalRNF225 
Broad Tumor PortalRNF225
OASIS PortalRNF225 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRNF225
BioMutasearch RNF225
DgiDB (Drug Gene Interaction Database)RNF225
DoCM (Curated mutations)RNF225 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF225 (select a term)
intoGenRNF225
Cancer3DRNF225(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF225
Genetic Testing Registry RNF225
NextProtM0QZC1 [Medical]
TSGene646862
GENETestsRNF225
Target ValidationRNF225
Huge Navigator RNF225 [HugePedia]
snp3D : Map Gene to Disease646862
BioCentury BCIQRNF225
ClinGenRNF225
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646862
Chemical/Pharm GKB GenePA166123731
Clinical trialRNF225
Miscellaneous
canSAR (ICR)RNF225 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF225
EVEXRNF225
GoPubMedRNF225
iHOPRNF225
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:28 CEST 2017

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