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RNF24 (ring finger protein 24)

Identity

Alias_symbol (synonym)G1L
Other alias
HGNC (Hugo) RNF24
LocusID (NCBI) 11237
Atlas_Id 47395
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3912069 and ends at 3996216 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AP5S1 (20p13) / RNF24 (20p13)ATRN (20p13) / RNF24 (20p13)PLEKHM3 (2q33.3) / RNF24 (20p13)
RBL2 (16q12.2) / RNF24 (20p13)RNF24 (20p13) / CDS2 (20p12.3)RNF24 (20p13) / ISM1 (20p12.1)
RNF24 (20p13) / LRRC58 (3q13.33)RNF24 (20p13) / RNF24 (20p13)ATRN 20p13 / RNF24 20p13
C20orf29 RNF24 20p13RNF24 20p13 / CDS2 20p12.3RNF24 20p13 / ISM1 20p12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF24   13779
Cards
Entrez_Gene (NCBI)RNF24  11237  ring finger protein 24
AliasesG1L
GeneCards (Weizmann)RNF24
Ensembl hg19 (Hinxton)ENSG00000101236 [Gene_View]  chr20:3912069-3996216 [Contig_View]  RNF24 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101236 [Gene_View]  chr20:3912069-3996216 [Contig_View]  RNF24 [Vega]
ICGC DataPortalENSG00000101236
TCGA cBioPortalRNF24
AceView (NCBI)RNF24
Genatlas (Paris)RNF24
WikiGenes11237
SOURCE (Princeton)RNF24
Genetics Home Reference (NIH)RNF24
Genomic and cartography
GoldenPath hg19 (UCSC)RNF24  -     chr20:3912069-3996216 -  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF24  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblRNF24 - 20p13 [CytoView hg19]  RNF24 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIRNF24 [Mapview hg19]  RNF24 [Mapview hg38]
OMIM612489   
Gene and transcription
Genbank (Entrez)AF151081 AL079313 AL096778 BC000213 BC039584
RefSeq transcript (Entrez)NM_001134337 NM_001134338 NM_001321749 NM_007219
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)RNF24
Cluster EST : UnigeneHs.589884 [ NCBI ]
CGAP (NCI)Hs.589884
Alternative Splicing GalleryENSG00000101236
Gene ExpressionRNF24 [ NCBI-GEO ]   RNF24 [ EBI - ARRAY_EXPRESS ]   RNF24 [ SEEK ]   RNF24 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11237
GTEX Portal (Tissue expression)RNF24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y225   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y225  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y225
Splice isoforms : SwissVarQ9Y225
PhosPhoSitePlusQ9Y225
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF24
DMDM Disease mutations11237
Blocks (Seattle)RNF24
PDB (SRS)2EP4   
PDB (PDBSum)2EP4   
PDB (IMB)2EP4   
PDB (RSDB)2EP4   
Structural Biology KnowledgeBase2EP4   
SCOP (Structural Classification of Proteins)2EP4   
CATH (Classification of proteins structures)2EP4   
SuperfamilyQ9Y225
Human Protein AtlasENSG00000101236
Peptide AtlasQ9Y225
HPRD10198
IPIIPI00797703   IPI00910656   IPI00000852   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y225
IntAct (EBI)Q9Y225
FunCoupENSG00000101236
BioGRIDRNF24
STRING (EMBL)RNF24
ZODIACRNF24
Ontologies - Pathways
QuickGOQ9Y225
Ontology : AmiGOGolgi membrane  protein polyubiquitination  protein binding  zinc ion binding  integral component of membrane  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIGolgi membrane  protein polyubiquitination  protein binding  zinc ion binding  integral component of membrane  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkRNF24
Atlas of Cancer Signalling NetworkRNF24
Wikipedia pathwaysRNF24
Orthology - Evolution
OrthoDB11237
GeneTree (enSembl)ENSG00000101236
Phylogenetic Trees/Animal Genes : TreeFamRNF24
HOVERGENQ9Y225
HOGENOMQ9Y225
Homologs : HomoloGeneRNF24
Homology/Alignments : Family Browser (UCSC)RNF24
Gene fusions - Rearrangements
Fusion : MitelmanRNF24/CDS2 [20p13/20p12.3]  
Fusion : MitelmanRNF24/ISM1 [20p13/20p12.1]  [t(20;20)(p12;p13)]  
Fusion: TCGAATRN 20p13 RNF24 20p13 BRCA
Fusion: TCGAC20orf29 RNF24 20p13 BRCA
Fusion: TCGARNF24 20p13 CDS2 20p12.3 LUAD
Fusion: TCGARNF24 20p13 ISM1 20p12.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF24
dbVarRNF24
ClinVarRNF24
1000_GenomesRNF24 
Exome Variant ServerRNF24
ExAC (Exome Aggregation Consortium)RNF24 (select the gene name)
Genetic variants : HAPMAP11237
Genomic Variants (DGV)RNF24 [DGVbeta]
DECIPHER (Syndromes)20:3912069-3996216  ENSG00000101236
CONAN: Copy Number AnalysisRNF24 
Mutations
ICGC Data PortalRNF24 
TCGA Data PortalRNF24 
Broad Tumor PortalRNF24
OASIS PortalRNF24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF24
DgiDB (Drug Gene Interaction Database)RNF24
DoCM (Curated mutations)RNF24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF24 (select a term)
intoGenRNF24
Cancer3DRNF24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612489   
Orphanet
MedgenRNF24
Genetic Testing Registry RNF24
NextProtQ9Y225 [Medical]
TSGene11237
GENETestsRNF24
Huge Navigator RNF24 [HugePedia]
snp3D : Map Gene to Disease11237
BioCentury BCIQRNF24
ClinGenRNF24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11237
Chemical/Pharm GKB GenePA34428
Clinical trialRNF24
Miscellaneous
canSAR (ICR)RNF24 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF24
EVEXRNF24
GoPubMedRNF24
iHOPRNF24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:43 CEST 2017

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