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RNF26 (ring finger protein 26)

Identity

Alias_symbol (synonym)MGC2642
Other alias-
HGNC (Hugo) RNF26
LocusID (NCBI) 79102
Atlas_Id 42133
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119334500 and ends at 119337314 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HIST2H2BE (1q21.2) / RNF26 (11q23.3)RNF26 (11q23.3) / RNF26 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF26   14646
Cards
Entrez_Gene (NCBI)RNF26  79102  ring finger protein 26
Aliases
GeneCards (Weizmann)RNF26
Ensembl hg19 (Hinxton)ENSG00000173456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173456 [Gene_View]  chr11:119334500-119337314 [Contig_View]  RNF26 [Vega]
ICGC DataPortalENSG00000173456
TCGA cBioPortalRNF26
AceView (NCBI)RNF26
Genatlas (Paris)RNF26
WikiGenes79102
SOURCE (Princeton)RNF26
Genetics Home Reference (NIH)RNF26
Genomic and cartography
GoldenPath hg38 (UCSC)RNF26  -     chr11:119334500-119337314 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF26  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblRNF26 - 11q23.3 [CytoView hg19]  RNF26 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIRNF26 [Mapview hg19]  RNF26 [Mapview hg38]
OMIM606130   
Gene and transcription
Genbank (Entrez)AB055622 AK075379 AK122642 AL702838 BC000058
RefSeq transcript (Entrez)NM_032015
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF26
Cluster EST : UnigeneHs.745522 [ NCBI ]
CGAP (NCI)Hs.745522
Alternative Splicing GalleryENSG00000173456
Gene ExpressionRNF26 [ NCBI-GEO ]   RNF26 [ EBI - ARRAY_EXPRESS ]   RNF26 [ SEEK ]   RNF26 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79102
GTEX Portal (Tissue expression)RNF26
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY78
Splice isoforms : SwissVarQ9BY78
PhosPhoSitePlusQ9BY78
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF26
DMDM Disease mutations79102
Blocks (Seattle)RNF26
SuperfamilyQ9BY78
Human Protein AtlasENSG00000173456
Peptide AtlasQ9BY78
HPRD05842
IPIIPI00012431   IPI00985219   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY78
IntAct (EBI)Q9BY78
FunCoupENSG00000173456
BioGRIDRNF26
STRING (EMBL)RNF26
ZODIACRNF26
Ontologies - Pathways
QuickGOQ9BY78
Ontology : AmiGOcellular_component  biological_process  zinc ion binding  integral component of membrane  
Ontology : EGO-EBIcellular_component  biological_process  zinc ion binding  integral component of membrane  
NDEx NetworkRNF26
Atlas of Cancer Signalling NetworkRNF26
Wikipedia pathwaysRNF26
Orthology - Evolution
OrthoDB79102
GeneTree (enSembl)ENSG00000173456
Phylogenetic Trees/Animal Genes : TreeFamRNF26
HOVERGENQ9BY78
HOGENOMQ9BY78
Homologs : HomoloGeneRNF26
Homology/Alignments : Family Browser (UCSC)RNF26
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF26
dbVarRNF26
ClinVarRNF26
1000_GenomesRNF26 
Exome Variant ServerRNF26
ExAC (Exome Aggregation Consortium)RNF26 (select the gene name)
Genetic variants : HAPMAP79102
Genomic Variants (DGV)RNF26 [DGVbeta]
DECIPHERRNF26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF26 
Mutations
ICGC Data PortalRNF26 
TCGA Data PortalRNF26 
Broad Tumor PortalRNF26
OASIS PortalRNF26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF26
DgiDB (Drug Gene Interaction Database)RNF26
DoCM (Curated mutations)RNF26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF26 (select a term)
intoGenRNF26
Cancer3DRNF26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606130   
Orphanet
MedgenRNF26
Genetic Testing Registry RNF26
NextProtQ9BY78 [Medical]
TSGene79102
GENETestsRNF26
Huge Navigator RNF26 [HugePedia]
snp3D : Map Gene to Disease79102
BioCentury BCIQRNF26
ClinGenRNF26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79102
Chemical/Pharm GKB GenePA34430
Clinical trialRNF26
Miscellaneous
canSAR (ICR)RNF26 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF26
EVEXRNF26
GoPubMedRNF26
iHOPRNF26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:19 CEST 2017

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