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RNF26 (ring finger protein 26)

Identity

Alias (NCBI)-
HGNC (Hugo) RNF26
HGNC Alias symbMGC2642
HGNC Alias namering finger protein with leucine zipper
LocusID (NCBI) 79102
Atlas_Id 42133
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119334527 and ends at 119337309 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST2H2BE (1q21.2) / RNF26 (11q23.3)RNF26 (11q23.3) / RNF26 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)RNF26   14646
Cards
Entrez_Gene (NCBI)RNF26    ring finger protein 26
Aliases
GeneCards (Weizmann)RNF26
Ensembl hg19 (Hinxton)ENSG00000173456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173456 [Gene_View]  ENSG00000173456 [Sequence]  chr11:119334527-119337309 [Contig_View]  RNF26 [Vega]
ICGC DataPortalENSG00000173456
TCGA cBioPortalRNF26
AceView (NCBI)RNF26
Genatlas (Paris)RNF26
SOURCE (Princeton)RNF26
Genetics Home Reference (NIH)RNF26
Genomic and cartography
GoldenPath hg38 (UCSC)RNF26  -     chr11:119334527-119337309 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF26  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathRNF26 - 11q23.3 [CytoView hg19]  RNF26 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000173456
genome Data Viewer NCBIRNF26 [Mapview hg19]  
OMIM606130   
Gene and transcription
Genbank (Entrez)AB055622 AK075379 AK122642 AL702838 BC000058
RefSeq transcript (Entrez)NM_032015
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNF26
Alternative Splicing GalleryENSG00000173456
Gene ExpressionRNF26 [ NCBI-GEO ]   RNF26 [ EBI - ARRAY_EXPRESS ]   RNF26 [ SEEK ]   RNF26 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF26 [ Firebrowse - Broad ]
GenevisibleExpression of RNF26 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79102
GTEX Portal (Tissue expression)RNF26
Human Protein AtlasENSG00000173456-RNF26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY78
Splice isoforms : SwissVarQ9BY78
PhosPhoSitePlusQ9BY78
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)RNF26_mRING-HC-C3HC5    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF26
Blocks (Seattle)RNF26
SuperfamilyQ9BY78
Human Protein Atlas [tissue]ENSG00000173456-RNF26 [tissue]
Peptide AtlasQ9BY78
HPRD05842
IPIIPI00012431   IPI00985219   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY78
IntAct (EBI)Q9BY78
BioGRIDRNF26
STRING (EMBL)RNF26
ZODIACRNF26
Ontologies - Pathways
QuickGOQ9BY78
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  endosome organization  zinc ion binding  integral component of membrane  protein ubiquitination  regulation of type I interferon production  negative regulation of defense response to virus  ubiquitin protein ligase activity  protein K11-linked ubiquitination  protein localization to perinuclear region of cytoplasm  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  endosome organization  zinc ion binding  integral component of membrane  protein ubiquitination  regulation of type I interferon production  negative regulation of defense response to virus  ubiquitin protein ligase activity  protein K11-linked ubiquitination  protein localization to perinuclear region of cytoplasm  
NDEx NetworkRNF26
Atlas of Cancer Signalling NetworkRNF26
Wikipedia pathwaysRNF26
Orthology - Evolution
OrthoDB79102
GeneTree (enSembl)ENSG00000173456
Phylogenetic Trees/Animal Genes : TreeFamRNF26
HOGENOMQ9BY78
Homologs : HomoloGeneRNF26
Homology/Alignments : Family Browser (UCSC)RNF26
Gene fusions - Rearrangements
Fusion : QuiverRNF26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF26 [hg38]
dbVarRNF26
ClinVarRNF26
MonarchRNF26
1000_GenomesRNF26 
Exome Variant ServerRNF26
GNOMAD BrowserENSG00000173456
Varsome BrowserRNF26
Genomic Variants (DGV)RNF26 [DGVbeta]
DECIPHERRNF26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNF26 
Mutations
ICGC Data PortalRNF26 
TCGA Data PortalRNF26 
Broad Tumor PortalRNF26
OASIS PortalRNF26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF26  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNF26
Mutations and Diseases : HGMDRNF26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF26
DgiDB (Drug Gene Interaction Database)RNF26
DoCM (Curated mutations)RNF26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF26 (select a term)
intoGenRNF26
Cancer3DRNF26(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606130   
Orphanet
DisGeNETRNF26
MedgenRNF26
Genetic Testing Registry RNF26
NextProtQ9BY78 [Medical]
GENETestsRNF26
Target ValidationRNF26
Huge Navigator RNF26 [HugePedia]
ClinGenRNF26
Clinical trials, drugs, therapy
MyCancerGenomeRNF26
Protein Interactions : CTD
Pharm GKB GenePA34430
PharosQ9BY78
Clinical trialRNF26
Miscellaneous
canSAR (ICR)RNF26 (select the gene name)
HarmonizomeRNF26
DataMed IndexRNF26
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRNF26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:35:24 CET 2021

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