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RNF32 (ring finger protein 32)

Identity

Alias_symbol (synonym)FKSG33
HSD15
LMBR2
Other alias
HGNC (Hugo) RNF32
LocusID (NCBI) 140545
Atlas_Id 47333
Location 7q36.3  [Link to chromosome band 7q36]
Location_base_pair Starts at 156433441 and ends at 156469820 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF32   17118
Cards
Entrez_Gene (NCBI)RNF32  140545  ring finger protein 32
AliasesFKSG33; HSD15; LMBR2
GeneCards (Weizmann)RNF32
Ensembl hg19 (Hinxton)ENSG00000105982 [Gene_View]  chr7:156433441-156469820 [Contig_View]  RNF32 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105982 [Gene_View]  chr7:156433441-156469820 [Contig_View]  RNF32 [Vega]
ICGC DataPortalENSG00000105982
TCGA cBioPortalRNF32
AceView (NCBI)RNF32
Genatlas (Paris)RNF32
WikiGenes140545
SOURCE (Princeton)RNF32
Genetics Home Reference (NIH)RNF32
Genomic and cartography
GoldenPath hg19 (UCSC)RNF32  -     chr7:156433441-156469820 +  7q36.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF32  -     7q36.3   [Description]    (hg38-Dec_2013)
EnsemblRNF32 - 7q36.3 [CytoView hg19]  RNF32 - 7q36.3 [CytoView hg38]
Mapping of homologs : NCBIRNF32 [Mapview hg19]  RNF32 [Mapview hg38]
OMIM610241   
Gene and transcription
Genbank (Entrez)AA412402 AF325690 AF441222 AF441224 AK307316
RefSeq transcript (Entrez)NM_001184996 NM_001184997 NM_001308273 NM_001308274 NM_030936
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929334
Consensus coding sequences : CCDS (NCBI)RNF32
Cluster EST : UnigeneHs.446194 [ NCBI ]
CGAP (NCI)Hs.446194
Alternative Splicing GalleryENSG00000105982
Gene ExpressionRNF32 [ NCBI-GEO ]   RNF32 [ EBI - ARRAY_EXPRESS ]   RNF32 [ SEEK ]   RNF32 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140545
GTEX Portal (Tissue expression)RNF32
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0A6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0A6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0A6
Splice isoforms : SwissVarQ9H0A6
PhosPhoSitePlusQ9H0A6
Domaine pattern : Prosite (Expaxy)IQ (PS50096)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)IQ_motif_EF-hand-BS    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)IQ (PF00612)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam00612    pfam13639   
Domain families : Smart (EMBL)IQ (SM00015)  RING (SM00184)  
Conserved Domain (NCBI)RNF32
DMDM Disease mutations140545
Blocks (Seattle)RNF32
SuperfamilyQ9H0A6
Human Protein AtlasENSG00000105982
Peptide AtlasQ9H0A6
HPRD11517
IPIIPI00008498   IPI00002602   IPI00760842   IPI00760732   IPI00873750   IPI00185169   IPI00902506   IPI00892649   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0A6
IntAct (EBI)Q9H0A6
FunCoupENSG00000105982
BioGRIDRNF32
STRING (EMBL)RNF32
ZODIACRNF32
Ontologies - Pathways
QuickGOQ9H0A6
Ontology : AmiGOprotein binding  endosome  zinc ion binding  aggresome  
Ontology : EGO-EBIprotein binding  endosome  zinc ion binding  aggresome  
NDEx NetworkRNF32
Atlas of Cancer Signalling NetworkRNF32
Wikipedia pathwaysRNF32
Orthology - Evolution
OrthoDB140545
GeneTree (enSembl)ENSG00000105982
Phylogenetic Trees/Animal Genes : TreeFamRNF32
HOVERGENQ9H0A6
HOGENOMQ9H0A6
Homologs : HomoloGeneRNF32
Homology/Alignments : Family Browser (UCSC)RNF32
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF32
dbVarRNF32
ClinVarRNF32
1000_GenomesRNF32 
Exome Variant ServerRNF32
ExAC (Exome Aggregation Consortium)RNF32 (select the gene name)
Genetic variants : HAPMAP140545
Genomic Variants (DGV)RNF32 [DGVbeta]
DECIPHER (Syndromes)7:156433441-156469820  ENSG00000105982
CONAN: Copy Number AnalysisRNF32 
Mutations
ICGC Data PortalRNF32 
TCGA Data PortalRNF32 
Broad Tumor PortalRNF32
OASIS PortalRNF32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF32
DgiDB (Drug Gene Interaction Database)RNF32
DoCM (Curated mutations)RNF32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF32 (select a term)
intoGenRNF32
Cancer3DRNF32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610241   
Orphanet
MedgenRNF32
Genetic Testing Registry RNF32
NextProtQ9H0A6 [Medical]
TSGene140545
GENETestsRNF32
Huge Navigator RNF32 [HugePedia]
snp3D : Map Gene to Disease140545
BioCentury BCIQRNF32
ClinGenRNF32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140545
Chemical/Pharm GKB GenePA34435
Clinical trialRNF32
Miscellaneous
canSAR (ICR)RNF32 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF32
EVEXRNF32
GoPubMedRNF32
iHOPRNF32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:24 CET 2017

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