RNF39 (ring finger protein 39)

2007-04-01  

Identity

HGNC
RNF39
LOCATION
6p22.1
LOCUSID
80352
ALIAS
FAP216,HZF,HZFW,LIRF

Other Information

Locus ID:

NCBI: 80352
MIM: 607524
HGNC: 18064
Ensembl: ENSG00000204618

Variants:

dbSNP: 80352
ClinVar: 80352
TCGA: ENSG00000204618
COSMIC: RNF39

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000204618ENST00000244360Q9H2S5
ENSG00000204618ENST00000244360Q96QB5
ENSG00000204618ENST00000376751Q9H2S5
ENSG00000204618ENST00000376751A0A1U9X8G2

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90
100
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
198514452009High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions.51
190503822009Association of HLA-C and HCP5 gene regions with the clinical course of HIV-1 infection.44
205930132010A major histocompatibility Class I locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1*15:01.20
287298892017Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1.14
196930882009The HLA-B/-C haplotype block contains major determinants for host control of HIV.12
208757972010TRIM39 and RNF39 are associated with Behçet's disease independently of HLA-B∗51 and -A∗26.12
281493312017Combining omics data to identify genes associated with allergic rhinitis.4

Citation

Dessen P

RNF39 (ring finger protein 39)

Atlas Genet Cytogenet Oncol Haematol. 2007-04-01

Online version: http://atlasgeneticsoncology.org/gene/47091/rnf39