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RNF39 (ring finger protein 39)

Identity

Alias (NCBI)FAP216
HZF
HZFW
LIRF
HGNC (Hugo) RNF39
HGNC Alias symbHZFw1
LIRF
LocusID (NCBI) 80352
Atlas_Id 47091
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30070266 and ends at 30075849 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)RNF39   18064
Cards
Entrez_Gene (NCBI)RNF39    ring finger protein 39
AliasesFAP216; HZF; HZFW; LIRF
GeneCards (Weizmann)RNF39
Ensembl hg19 (Hinxton)ENSG00000204618 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204618 [Gene_View]  ENSG00000204618 [Sequence]  chr6:30070266-30075849 [Contig_View]  RNF39 [Vega]
ICGC DataPortalENSG00000204618
TCGA cBioPortalRNF39
AceView (NCBI)RNF39
Genatlas (Paris)RNF39
SOURCE (Princeton)RNF39
Genetics Home Reference (NIH)RNF39
Genomic and cartography
GoldenPath hg38 (UCSC)RNF39  -     chr6:30070266-30075849 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNF39  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathRNF39 - 6p22.1 [CytoView hg19]  RNF39 - 6p22.1 [CytoView hg38]
ImmunoBaseENSG00000204618
genome Data Viewer NCBIRNF39 [Mapview hg19]  
OMIM607524   
Gene and transcription
Genbank (Entrez)AF238315 AF238316 AF238317 CA311242
RefSeq transcript (Entrez)NM_025236 NM_170769 NM_170770
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)RNF39
Alternative Splicing GalleryENSG00000204618
Gene ExpressionRNF39 [ NCBI-GEO ]   RNF39 [ EBI - ARRAY_EXPRESS ]   RNF39 [ SEEK ]   RNF39 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF39 [ Firebrowse - Broad ]
GenevisibleExpression of RNF39 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80352
GTEX Portal (Tissue expression)RNF39
Human Protein AtlasENSG00000204618-RNF39 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNF39
Blocks (Seattle)RNF39
Human Protein Atlas [tissue]ENSG00000204618-RNF39 [tissue]
HPRD09600
IPIIPI00252162   IPI00041053   IPI00515028   IPI00640556   IPI00643966   IPI00894246   IPI00893629   
Protein Interaction databases
BioGRIDRNF39
STRING (EMBL)RNF39
ZODIACRNF39
Ontologies - Pathways
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRNF39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:43:39 CET 2021

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