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RNF44 (ring finger protein 44)

Identity

Alias_symbol (synonym)KIAA1100
Other alias-
HGNC (Hugo) RNF44
LocusID (NCBI) 22838
Atlas_Id 47211
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 175953700 and ends at 175964421 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FMNL3 (12q13.12) / RNF44 (5q35.2)MEN1 (11q13.1) / RNF44 (5q35.2)RNF44 (5q35.2) / NXF3 (Xq22.1)
RNF44 (5q35.2) / PVT1 (8q24.21)RNF44 5q35.2 / NXF3 Xq22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNF44   19180
Cards
Entrez_Gene (NCBI)RNF44  22838  ring finger protein 44
Aliases
GeneCards (Weizmann)RNF44
Ensembl hg19 (Hinxton)ENSG00000146083 [Gene_View]  chr5:175953700-175964421 [Contig_View]  RNF44 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146083 [Gene_View]  chr5:175953700-175964421 [Contig_View]  RNF44 [Vega]
ICGC DataPortalENSG00000146083
TCGA cBioPortalRNF44
AceView (NCBI)RNF44
Genatlas (Paris)RNF44
WikiGenes22838
SOURCE (Princeton)RNF44
Genetics Home Reference (NIH)RNF44
Genomic and cartography
GoldenPath hg19 (UCSC)RNF44  -     chr5:175953700-175964421 -  5q35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNF44  -     5q35.2   [Description]    (hg38-Dec_2013)
EnsemblRNF44 - 5q35.2 [CytoView hg19]  RNF44 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBIRNF44 [Mapview hg19]  RNF44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB029023 AK127673 AK302385 AL547765 BC039833
RefSeq transcript (Entrez)NM_014901
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)RNF44
Cluster EST : UnigeneHs.434888 [ NCBI ]
CGAP (NCI)Hs.434888
Alternative Splicing GalleryENSG00000146083
Gene ExpressionRNF44 [ NCBI-GEO ]   RNF44 [ EBI - ARRAY_EXPRESS ]   RNF44 [ SEEK ]   RNF44 [ MEM ]
Gene Expression Viewer (FireBrowse)RNF44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22838
GTEX Portal (Tissue expression)RNF44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L0R7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L0R7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L0R7
Splice isoforms : SwissVarQ7L0R7
PhosPhoSitePlusQ7L0R7
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNF44
DMDM Disease mutations22838
Blocks (Seattle)RNF44
SuperfamilyQ7L0R7
Human Protein AtlasENSG00000146083
Peptide AtlasQ7L0R7
HPRD15265
IPIIPI00470579   IPI01010913   IPI00444208   IPI00967789   IPI00966451   IPI00968112   
Protein Interaction databases
DIP (DOE-UCLA)Q7L0R7
IntAct (EBI)Q7L0R7
FunCoupENSG00000146083
BioGRIDRNF44
STRING (EMBL)RNF44
ZODIACRNF44
Ontologies - Pathways
QuickGOQ7L0R7
Ontology : AmiGOnucleoplasm  cytoplasm  regulation of transcription, DNA-templated  zinc ion binding  protein ubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBInucleoplasm  cytoplasm  regulation of transcription, DNA-templated  zinc ion binding  protein ubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkRNF44
Atlas of Cancer Signalling NetworkRNF44
Wikipedia pathwaysRNF44
Orthology - Evolution
OrthoDB22838
GeneTree (enSembl)ENSG00000146083
Phylogenetic Trees/Animal Genes : TreeFamRNF44
HOVERGENQ7L0R7
HOGENOMQ7L0R7
Homologs : HomoloGeneRNF44
Homology/Alignments : Family Browser (UCSC)RNF44
Gene fusions - Rearrangements
Fusion : MitelmanRNF44/NXF3 [5q35.2/Xq22.1]  
Fusion: TCGARNF44 5q35.2 NXF3 Xq22.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNF44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNF44
dbVarRNF44
ClinVarRNF44
1000_GenomesRNF44 
Exome Variant ServerRNF44
ExAC (Exome Aggregation Consortium)RNF44 (select the gene name)
Genetic variants : HAPMAP22838
Genomic Variants (DGV)RNF44 [DGVbeta]
DECIPHER (Syndromes)5:175953700-175964421  ENSG00000146083
CONAN: Copy Number AnalysisRNF44 
Mutations
ICGC Data PortalRNF44 
TCGA Data PortalRNF44 
Broad Tumor PortalRNF44
OASIS PortalRNF44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNF44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNF44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNF44
DgiDB (Drug Gene Interaction Database)RNF44
DoCM (Curated mutations)RNF44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNF44 (select a term)
intoGenRNF44
Cancer3DRNF44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNF44
Genetic Testing Registry RNF44
NextProtQ7L0R7 [Medical]
TSGene22838
GENETestsRNF44
Huge Navigator RNF44 [HugePedia]
snp3D : Map Gene to Disease22838
BioCentury BCIQRNF44
ClinGenRNF44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22838
Chemical/Pharm GKB GenePA38819
Clinical trialRNF44
Miscellaneous
canSAR (ICR)RNF44 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNF44
EVEXRNF44
GoPubMedRNF44
iHOPRNF44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:26 CET 2017

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