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RNFT1 (ring finger protein, transmembrane 1)

Identity

Alias_symbol (synonym)PTD016
Other alias
HGNC (Hugo) RNFT1
LocusID (NCBI) 51136
Atlas_Id 54587
Location 17q23.1  [Link to chromosome band 17q23]
Location_base_pair Starts at 59952362 and ends at 59964756 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCAS3 (17q23.2) / RNFT1 (17q23.1)CDC6 (17q21.2) / RNFT1 (17q23.1)DHX40 (17q23.1) / RNFT1 (17q23.1)
RNFT1 (17q23.1) / PAAF1 (11q13.4)TRIM37 (17q22) / RNFT1 (17q23.1)VMP1 (17q23.1) / RNFT1 (17q23.1)
BCAS3 17q23.2 / RNFT1 17q23.1CDC6 17q21.2 / RNFT1 17q23.1DHX40 17q23.1 / RNFT1 17q23.1
RNFT1 17q23.1 / PAAF1 11q13.4VMP1 17q23.1 / RNFT1 17q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNFT1   30206
Cards
Entrez_Gene (NCBI)RNFT1  51136  ring finger protein, transmembrane 1
AliasesPTD016
GeneCards (Weizmann)RNFT1
Ensembl hg19 (Hinxton)ENSG00000189050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189050 [Gene_View]  chr17:59952362-59964756 [Contig_View]  RNFT1 [Vega]
ICGC DataPortalENSG00000189050
TCGA cBioPortalRNFT1
AceView (NCBI)RNFT1
Genatlas (Paris)RNFT1
WikiGenes51136
SOURCE (Princeton)RNFT1
Genetics Home Reference (NIH)RNFT1
Genomic and cartography
GoldenPath hg38 (UCSC)RNFT1  -     chr17:59952362-59964756 -  17q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNFT1  -     17q23.1   [Description]    (hg19-Feb_2009)
EnsemblRNFT1 - 17q23.1 [CytoView hg19]  RNFT1 - 17q23.1 [CytoView hg38]
Mapping of homologs : NCBIRNFT1 [Mapview hg19]  RNFT1 [Mapview hg38]
OMIM615172   
Gene and transcription
Genbank (Entrez)AF100745 AK098649 AK294806 AK295162 AK296197
RefSeq transcript (Entrez)NM_016125
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNFT1
Cluster EST : UnigeneHs.531701 [ NCBI ]
CGAP (NCI)Hs.531701
Alternative Splicing GalleryENSG00000189050
Gene ExpressionRNFT1 [ NCBI-GEO ]   RNFT1 [ EBI - ARRAY_EXPRESS ]   RNFT1 [ SEEK ]   RNFT1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNFT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51136
GTEX Portal (Tissue expression)RNFT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5M7Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5M7Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5M7Z0
Splice isoforms : SwissVarQ5M7Z0
PhosPhoSitePlusQ5M7Z0
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNFT1
DMDM Disease mutations51136
Blocks (Seattle)RNFT1
SuperfamilyQ5M7Z0
Human Protein AtlasENSG00000189050
Peptide AtlasQ5M7Z0
HPRD17925
IPIIPI00297702   IPI00885196   IPI00871736   IPI01012095   IPI00976987   
Protein Interaction databases
DIP (DOE-UCLA)Q5M7Z0
IntAct (EBI)Q5M7Z0
FunCoupENSG00000189050
BioGRIDRNFT1
STRING (EMBL)RNFT1
ZODIACRNFT1
Ontologies - Pathways
QuickGOQ5M7Z0
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkRNFT1
Atlas of Cancer Signalling NetworkRNFT1
Wikipedia pathwaysRNFT1
Orthology - Evolution
OrthoDB51136
GeneTree (enSembl)ENSG00000189050
Phylogenetic Trees/Animal Genes : TreeFamRNFT1
HOVERGENQ5M7Z0
HOGENOMQ5M7Z0
Homologs : HomoloGeneRNFT1
Homology/Alignments : Family Browser (UCSC)RNFT1
Gene fusions - Rearrangements
Fusion : MitelmanBCAS3/RNFT1 [17q23.2/17q23.1]  [t(17;17)(q23;q23)]  
Fusion : MitelmanCDC6/RNFT1 [17q21.2/17q23.1]  [t(17;17)(q21;q23)]  
Fusion : MitelmanDHX40/RNFT1 [17q23.1/17q23.1]  [t(17;17)(q23;q23)]  
Fusion : MitelmanRNFT1/PAAF1 [17q23.1/11q13.4]  [t(11;17)(q13;q23)]  
Fusion : MitelmanTRIM37/RNFT1 [17q22/17q23.1]  [t(17;17)(q22;q23)]  
Fusion : MitelmanVMP1/RNFT1 [17q23.1/17q23.1]  [t(17;17)(q23;q23)]  
Fusion: TCGABCAS3 17q23.2 RNFT1 17q23.1 LGG
Fusion: TCGACDC6 17q21.2 RNFT1 17q23.1 BRCA
Fusion: TCGADHX40 17q23.1 RNFT1 17q23.1 BRCA LUAD LUSC
Fusion: TCGARNFT1 17q23.1 PAAF1 11q13.4 BRCA
Fusion: TCGAVMP1 17q23.1 RNFT1 17q23.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNFT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNFT1
dbVarRNFT1
ClinVarRNFT1
1000_GenomesRNFT1 
Exome Variant ServerRNFT1
ExAC (Exome Aggregation Consortium)RNFT1 (select the gene name)
Genetic variants : HAPMAP51136
Genomic Variants (DGV)RNFT1 [DGVbeta]
DECIPHERRNFT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNFT1 
Mutations
ICGC Data PortalRNFT1 
TCGA Data PortalRNFT1 
Broad Tumor PortalRNFT1
OASIS PortalRNFT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNFT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNFT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNFT1
DgiDB (Drug Gene Interaction Database)RNFT1
DoCM (Curated mutations)RNFT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNFT1 (select a term)
intoGenRNFT1
Cancer3DRNFT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615172   
Orphanet
MedgenRNFT1
Genetic Testing Registry RNFT1
NextProtQ5M7Z0 [Medical]
TSGene51136
GENETestsRNFT1
Target ValidationRNFT1
Huge Navigator RNFT1 [HugePedia]
snp3D : Map Gene to Disease51136
BioCentury BCIQRNFT1
ClinGenRNFT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51136
Chemical/Pharm GKB GenePA162401921
Clinical trialRNFT1
Miscellaneous
canSAR (ICR)RNFT1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNFT1
EVEXRNFT1
GoPubMedRNFT1
iHOPRNFT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:13:15 CEST 2017

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