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RNFT2 (ring finger protein, transmembrane 2)

Identity

Alias (NCBI)TMEM118
HGNC (Hugo) RNFT2
HGNC Alias symbFLJ14627
HGNC Previous nameTMEM118
HGNC Previous nametransmembrane protein 118
LocusID (NCBI) 84900
Atlas_Id 72716
Location 12q24.22  [Link to chromosome band 12q24]
Location_base_pair Starts at 116738315 and ends at 116853631 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHCYL1 (1p13.3) / RNFT2 (12q24.22)TMEM120B (12q24.31) / RNFT2 (12q24.22)ZDHHC17 (12q21.2) / RNFT2 (12q24.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RNFT2   25905
Cards
Entrez_Gene (NCBI)RNFT2    ring finger protein, transmembrane 2
AliasesTMEM118
GeneCards (Weizmann)RNFT2
Ensembl hg19 (Hinxton)ENSG00000135119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135119 [Gene_View]  ENSG00000135119 [Sequence]  chr12:116738315-116853631 [Contig_View]  RNFT2 [Vega]
ICGC DataPortalENSG00000135119
TCGA cBioPortalRNFT2
AceView (NCBI)RNFT2
Genatlas (Paris)RNFT2
SOURCE (Princeton)RNFT2
Genetics Home Reference (NIH)RNFT2
Genomic and cartography
GoldenPath hg38 (UCSC)RNFT2  -     chr12:116738315-116853631 +  12q24.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNFT2  -     12q24.22   [Description]    (hg19-Feb_2009)
GoldenPathRNFT2 - 12q24.22 [CytoView hg19]  RNFT2 - 12q24.22 [CytoView hg38]
ImmunoBaseENSG00000135119
Genome Data Viewer NCBIRNFT2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK027533 AK093164 AK094682 AY358585 BC011878
RefSeq transcript (Entrez)NM_001109903 NM_001382266 NM_032814
Consensus coding sequences : CCDS (NCBI)RNFT2
Gene ExpressionRNFT2 [ NCBI-GEO ]   RNFT2 [ EBI - ARRAY_EXPRESS ]   RNFT2 [ SEEK ]   RNFT2 [ MEM ]
Gene Expression Viewer (FireBrowse)RNFT2 [ Firebrowse - Broad ]
GenevisibleExpression of RNFT2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84900
GTEX Portal (Tissue expression)RNFT2
Human Protein AtlasENSG00000135119-RNFT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EX2
PhosPhoSitePlusQ96EX2
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNFT2
SuperfamilyQ96EX2
AlphaFold pdb e-kbQ96EX2   
Human Protein Atlas [tissue]ENSG00000135119-RNFT2 [tissue]
HPRD08600
Protein Interaction databases
DIP (DOE-UCLA)Q96EX2
IntAct (EBI)Q96EX2
BioGRIDRNFT2
STRING (EMBL)RNFT2
ZODIACRNFT2
Ontologies - Pathways
QuickGOQ96EX2
Ontology : AmiGOintegral component of membrane  protein ubiquitination  metal ion binding  ubiquitin protein ligase activity  positive regulation of ERAD pathway  
Ontology : EGO-EBIintegral component of membrane  protein ubiquitination  metal ion binding  ubiquitin protein ligase activity  positive regulation of ERAD pathway  
NDEx NetworkRNFT2
Atlas of Cancer Signalling NetworkRNFT2
Wikipedia pathwaysRNFT2
Orthology - Evolution
OrthoDB84900
GeneTree (enSembl)ENSG00000135119
Phylogenetic Trees/Animal Genes : TreeFamRNFT2
Homologs : HomoloGeneRNFT2
Homology/Alignments : Family Browser (UCSC)RNFT2
Gene fusions - Rearrangements
Fusion : QuiverRNFT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNFT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNFT2
dbVarRNFT2
ClinVarRNFT2
MonarchRNFT2
1000_GenomesRNFT2 
Exome Variant ServerRNFT2
GNOMAD BrowserENSG00000135119
Varsome BrowserRNFT2
ACMGRNFT2 variants
VarityQ96EX2
Genomic Variants (DGV)RNFT2 [DGVbeta]
DECIPHERRNFT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNFT2 
Mutations
ICGC Data PortalRNFT2 
TCGA Data PortalRNFT2 
Broad Tumor PortalRNFT2
OASIS PortalRNFT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNFT2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRNFT2
Mutations and Diseases : HGMDRNFT2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRNFT2
DgiDB (Drug Gene Interaction Database)RNFT2
DoCM (Curated mutations)RNFT2
CIViC (Clinical Interpretations of Variants in Cancer)RNFT2
Cancer3DRNFT2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRNFT2
MedgenRNFT2
Genetic Testing Registry RNFT2
NextProtQ96EX2 [Medical]
GENETestsRNFT2
Target ValidationRNFT2
Huge Navigator RNFT2 [HugePedia]
ClinGenRNFT2
Clinical trials, drugs, therapy
MyCancerGenomeRNFT2
Protein Interactions : CTDRNFT2
Pharm GKB GenePA162401944
PharosQ96EX2
Clinical trialRNFT2
Miscellaneous
canSAR (ICR)RNFT2
HarmonizomeRNFT2
DataMed IndexRNFT2
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRNFT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:18:49 CEST 2021

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