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RNFT2 (ring finger protein, transmembrane 2)

Identity

Alias_namesTMEM118
transmembrane protein 118
Alias_symbol (synonym)FLJ14627
Other alias
HGNC (Hugo) RNFT2
LocusID (NCBI) 84900
Atlas_Id 72716
Location 12q24.22  [Link to chromosome band 12q24]
Location_base_pair Starts at 117176096 and ends at 117291436 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AHCYL1 (1p13.3) / RNFT2 (12q24.22)TMEM120B (12q24.31) / RNFT2 (12q24.22)ZDHHC17 (12q21.2) / RNFT2 (12q24.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNFT2   25905
Cards
Entrez_Gene (NCBI)RNFT2  84900  ring finger protein, transmembrane 2
AliasesTMEM118
GeneCards (Weizmann)RNFT2
Ensembl hg19 (Hinxton)ENSG00000135119 [Gene_View]  chr12:117176096-117291436 [Contig_View]  RNFT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135119 [Gene_View]  chr12:117176096-117291436 [Contig_View]  RNFT2 [Vega]
ICGC DataPortalENSG00000135119
TCGA cBioPortalRNFT2
AceView (NCBI)RNFT2
Genatlas (Paris)RNFT2
WikiGenes84900
SOURCE (Princeton)RNFT2
Genetics Home Reference (NIH)RNFT2
Genomic and cartography
GoldenPath hg19 (UCSC)RNFT2  -     chr12:117176096-117291436 +  12q24.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNFT2  -     12q24.22   [Description]    (hg38-Dec_2013)
EnsemblRNFT2 - 12q24.22 [CytoView hg19]  RNFT2 - 12q24.22 [CytoView hg38]
Mapping of homologs : NCBIRNFT2 [Mapview hg19]  RNFT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027533 AK093164 AK094682 AY358585 BC011878
RefSeq transcript (Entrez)NM_001109903 NM_032814
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929385
Consensus coding sequences : CCDS (NCBI)RNFT2
Cluster EST : UnigeneHs.437195 [ NCBI ]
CGAP (NCI)Hs.437195
Alternative Splicing GalleryENSG00000135119
Gene ExpressionRNFT2 [ NCBI-GEO ]   RNFT2 [ EBI - ARRAY_EXPRESS ]   RNFT2 [ SEEK ]   RNFT2 [ MEM ]
Gene Expression Viewer (FireBrowse)RNFT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84900
GTEX Portal (Tissue expression)RNFT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EX2
Splice isoforms : SwissVarQ96EX2
PhosPhoSitePlusQ96EX2
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)RNFT2
DMDM Disease mutations84900
Blocks (Seattle)RNFT2
SuperfamilyQ96EX2
Human Protein AtlasENSG00000135119
Peptide AtlasQ96EX2
HPRD08600
IPIIPI00797961   IPI00386617   IPI00878447   IPI00432422   IPI01020927   IPI00877637   
Protein Interaction databases
DIP (DOE-UCLA)Q96EX2
IntAct (EBI)Q96EX2
FunCoupENSG00000135119
BioGRIDRNFT2
STRING (EMBL)RNFT2
ZODIACRNFT2
Ontologies - Pathways
QuickGOQ96EX2
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkRNFT2
Atlas of Cancer Signalling NetworkRNFT2
Wikipedia pathwaysRNFT2
Orthology - Evolution
OrthoDB84900
GeneTree (enSembl)ENSG00000135119
Phylogenetic Trees/Animal Genes : TreeFamRNFT2
HOVERGENQ96EX2
HOGENOMQ96EX2
Homologs : HomoloGeneRNFT2
Homology/Alignments : Family Browser (UCSC)RNFT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNFT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNFT2
dbVarRNFT2
ClinVarRNFT2
1000_GenomesRNFT2 
Exome Variant ServerRNFT2
ExAC (Exome Aggregation Consortium)RNFT2 (select the gene name)
Genetic variants : HAPMAP84900
Genomic Variants (DGV)RNFT2 [DGVbeta]
DECIPHER (Syndromes)12:117176096-117291436  ENSG00000135119
CONAN: Copy Number AnalysisRNFT2 
Mutations
ICGC Data PortalRNFT2 
TCGA Data PortalRNFT2 
Broad Tumor PortalRNFT2
OASIS PortalRNFT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNFT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNFT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNFT2
DgiDB (Drug Gene Interaction Database)RNFT2
DoCM (Curated mutations)RNFT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNFT2 (select a term)
intoGenRNFT2
Cancer3DRNFT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRNFT2
Genetic Testing Registry RNFT2
NextProtQ96EX2 [Medical]
TSGene84900
GENETestsRNFT2
Huge Navigator RNFT2 [HugePedia]
snp3D : Map Gene to Disease84900
BioCentury BCIQRNFT2
ClinGenRNFT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84900
Chemical/Pharm GKB GenePA162401944
Clinical trialRNFT2
Miscellaneous
canSAR (ICR)RNFT2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNFT2
EVEXRNFT2
GoPubMedRNFT2
iHOPRNFT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:41:22 CET 2017

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