Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNLS (renalase, FAD dependent amine oxidase)

Identity

Alias_namesC10orf59
chromosome 10 open reading frame 59
Alias_symbol (synonym)FLJ11218
renalase
Other aliasRENALASE
HGNC (Hugo) RNLS
LocusID (NCBI) 55328
Atlas_Id 54588
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88284102 and ends at 88583325 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MGEA5 (10q24.32) / RNLS (10q23.31)NFIA (1p31.3) / RNLS (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNLS   25641
Cards
Entrez_Gene (NCBI)RNLS  55328  renalase, FAD dependent amine oxidase
AliasesC10orf59; RENALASE
GeneCards (Weizmann)RNLS
Ensembl hg19 (Hinxton)ENSG00000184719 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184719 [Gene_View]  chr10:88284102-88583325 [Contig_View]  RNLS [Vega]
ICGC DataPortalENSG00000184719
TCGA cBioPortalRNLS
AceView (NCBI)RNLS
Genatlas (Paris)RNLS
WikiGenes55328
SOURCE (Princeton)RNLS
Genetics Home Reference (NIH)RNLS
Genomic and cartography
GoldenPath hg38 (UCSC)RNLS  -     chr10:88284102-88583325 -  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNLS  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblRNLS - 10q23.31 [CytoView hg19]  RNLS - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBIRNLS [Mapview hg19]  RNLS [Mapview hg38]
OMIM609360   
Gene and transcription
Genbank (Entrez)AA854849 AK002080 AK296262 BC005364 BM978857
RefSeq transcript (Entrez)NM_001031709 NM_018363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNLS
Cluster EST : UnigeneHs.149849 [ NCBI ]
CGAP (NCI)Hs.149849
Alternative Splicing GalleryENSG00000184719
Gene ExpressionRNLS [ NCBI-GEO ]   RNLS [ EBI - ARRAY_EXPRESS ]   RNLS [ SEEK ]   RNLS [ MEM ]
Gene Expression Viewer (FireBrowse)RNLS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55328
GTEX Portal (Tissue expression)RNLS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYX0
Splice isoforms : SwissVarQ5VYX0
PhosPhoSitePlusQ5VYX0
Domains : Interpro (EBI)Amino_oxidase    FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)Amino_oxidase (PF01593)   
Domain families : Pfam (NCBI)pfam01593   
Conserved Domain (NCBI)RNLS
DMDM Disease mutations55328
Blocks (Seattle)RNLS
PDB (SRS)3QJ4   
PDB (PDBSum)3QJ4   
PDB (IMB)3QJ4   
PDB (RSDB)3QJ4   
Structural Biology KnowledgeBase3QJ4   
SCOP (Structural Classification of Proteins)3QJ4   
CATH (Classification of proteins structures)3QJ4   
SuperfamilyQ5VYX0
Human Protein AtlasENSG00000184719
Peptide AtlasQ5VYX0
HPRD07742
IPIIPI00028526   IPI00019998   IPI00908925   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYX0
IntAct (EBI)Q5VYX0
FunCoupENSG00000184719
BioGRIDRNLS
STRING (EMBL)RNLS
ZODIACRNLS
Ontologies - Pathways
QuickGOQ5VYX0
Ontology : AmiGOresponse to ischemia  extracellular space  oxidoreductase activity  oxidation-reduction process  response to epinephrine  response to salt  
Ontology : EGO-EBIresponse to ischemia  extracellular space  oxidoreductase activity  oxidation-reduction process  response to epinephrine  response to salt  
NDEx NetworkRNLS
Atlas of Cancer Signalling NetworkRNLS
Wikipedia pathwaysRNLS
Orthology - Evolution
OrthoDB55328
GeneTree (enSembl)ENSG00000184719
Phylogenetic Trees/Animal Genes : TreeFamRNLS
HOVERGENQ5VYX0
HOGENOMQ5VYX0
Homologs : HomoloGeneRNLS
Homology/Alignments : Family Browser (UCSC)RNLS
Gene fusions - Rearrangements
Fusion : MitelmanNFIA/RNLS [1p31.3/10q23.31]  [t(1;10)(p31;q23)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNLS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNLS
dbVarRNLS
ClinVarRNLS
1000_GenomesRNLS 
Exome Variant ServerRNLS
ExAC (Exome Aggregation Consortium)RNLS (select the gene name)
Genetic variants : HAPMAP55328
Genomic Variants (DGV)RNLS [DGVbeta]
DECIPHERRNLS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNLS 
Mutations
ICGC Data PortalRNLS 
TCGA Data PortalRNLS 
Broad Tumor PortalRNLS
OASIS PortalRNLS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNLS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNLS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNLS
DgiDB (Drug Gene Interaction Database)RNLS
DoCM (Curated mutations)RNLS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNLS (select a term)
intoGenRNLS
Cancer3DRNLS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609360   
Orphanet
MedgenRNLS
Genetic Testing Registry RNLS
NextProtQ5VYX0 [Medical]
TSGene55328
GENETestsRNLS
Target ValidationRNLS
Huge Navigator RNLS [HugePedia]
snp3D : Map Gene to Disease55328
BioCentury BCIQRNLS
ClinGenRNLS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55328
Chemical/Pharm GKB GenePA165549084
Clinical trialRNLS
Miscellaneous
canSAR (ICR)RNLS (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNLS
EVEXRNLS
GoPubMedRNLS
iHOPRNLS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:06:05 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.