Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RNMT (RNA guanine-7 methyltransferase)

Identity

Alias_namesRNA (guanine-7-) methyltransferase
Alias_symbol (synonym)RG7MT1
Other aliasCMT1
CMT1c
MET
Met
cm1p
hCMT1
hMet
HGNC (Hugo) RNMT
LocusID (NCBI) 8731
Atlas_Id 55481
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 13726660 and ends at 13764556 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNMT (18p11.21) / ATF7 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNMT   10075
Cards
Entrez_Gene (NCBI)RNMT  8731  RNA guanine-7 methyltransferase
AliasesCMT1; CMT1c; MET; Met; 
RG7MT1; cm1p; hCMT1; hMet
GeneCards (Weizmann)RNMT
Ensembl hg19 (Hinxton)ENSG00000101654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101654 [Gene_View]  ENSG00000101654 [Sequence]  chr18:13726660-13764556 [Contig_View]  RNMT [Vega]
ICGC DataPortalENSG00000101654
TCGA cBioPortalRNMT
AceView (NCBI)RNMT
Genatlas (Paris)RNMT
WikiGenes8731
SOURCE (Princeton)RNMT
Genetics Home Reference (NIH)RNMT
Genomic and cartography
GoldenPath hg38 (UCSC)RNMT  -     chr18:13726660-13764556 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNMT  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblRNMT - 10q23.31 [CytoView hg19]  RNMT - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBIRNMT [Mapview hg19]  RNMT [Mapview hg38]
OMIM603514   
Gene and transcription
Genbank (Entrez)AB007858 AB020966 AB022604 AB022605 AB022606
RefSeq transcript (Entrez)NM_001308263 NM_003799
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNMT
Cluster EST : UnigeneHs.592347 [ NCBI ]
CGAP (NCI)Hs.592347
Alternative Splicing GalleryENSG00000101654
Gene ExpressionRNMT [ NCBI-GEO ]   RNMT [ EBI - ARRAY_EXPRESS ]   RNMT [ SEEK ]   RNMT [ MEM ]
Gene Expression Viewer (FireBrowse)RNMT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8731
GTEX Portal (Tissue expression)RNMT
Human Protein AtlasENSG00000101654-RNMT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43148   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43148  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43148
Splice isoforms : SwissVarO43148
PhosPhoSitePlusO43148
Domaine pattern : Prosite (Expaxy)RNA_CAP0_MT (PS51562)   
Domains : Interpro (EBI)mRNA_G-N7_MeTrfase    mRNA_G-N7_MeTrfase_dom    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Pox_MCEL (PF03291)   
Domain families : Pfam (NCBI)pfam03291   
Conserved Domain (NCBI)RNMT
DMDM Disease mutations8731
Blocks (Seattle)RNMT
PDB (SRS)3BGV    3EPP    5E8J    5E9J    5E9W   
PDB (PDBSum)3BGV    3EPP    5E8J    5E9J    5E9W   
PDB (IMB)3BGV    3EPP    5E8J    5E9J    5E9W   
PDB (RSDB)3BGV    3EPP    5E8J    5E9J    5E9W   
Structural Biology KnowledgeBase3BGV    3EPP    5E8J    5E9J    5E9W   
SCOP (Structural Classification of Proteins)3BGV    3EPP    5E8J    5E9J    5E9W   
CATH (Classification of proteins structures)3BGV    3EPP    5E8J    5E9J    5E9W   
SuperfamilyO43148
Human Protein Atlas [tissue]ENSG00000101654-RNMT [tissue]
Peptide AtlasO43148
HPRD04622
IPIIPI00410657   IPI00747403   IPI01015601   IPI01015926   
Protein Interaction databases
DIP (DOE-UCLA)O43148
IntAct (EBI)O43148
FunCoupENSG00000101654
BioGRIDRNMT
STRING (EMBL)RNMT
ZODIACRNMT
Ontologies - Pathways
QuickGOO43148
Ontology : AmiGOfibrillar center  RNA binding  mRNA (guanine-N7-)-methyltransferase activity  mRNA (guanine-N7-)-methyltransferase activity  mRNA (guanine-N7-)-methyltransferase activity  mRNA (guanine-N7-)-methyltransferase activity  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  mRNA cap binding complex  mRNA cap binding complex  transcription by RNA polymerase II  7-methylguanosine mRNA capping  7-methylguanosine mRNA capping  7-methylguanosine mRNA capping  7-methylguanosine mRNA capping  mRNA cap methyltransferase complex  receptor complex  RNA 5'-cap (guanine-N7)-methylation  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBIfibrillar center  RNA binding  mRNA (guanine-N7-)-methyltransferase activity  mRNA (guanine-N7-)-methyltransferase activity  mRNA (guanine-N7-)-methyltransferase activity  mRNA (guanine-N7-)-methyltransferase activity  protein binding  nucleus  nucleus  nucleoplasm  nucleoplasm  mRNA cap binding complex  mRNA cap binding complex  transcription by RNA polymerase II  7-methylguanosine mRNA capping  7-methylguanosine mRNA capping  7-methylguanosine mRNA capping  7-methylguanosine mRNA capping  mRNA cap methyltransferase complex  receptor complex  RNA 5'-cap (guanine-N7)-methylation  cellular response to leukemia inhibitory factor  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkRNMT
Atlas of Cancer Signalling NetworkRNMT
Wikipedia pathwaysRNMT
Orthology - Evolution
OrthoDB8731
GeneTree (enSembl)ENSG00000101654
Phylogenetic Trees/Animal Genes : TreeFamRNMT
HOVERGENO43148
HOGENOMO43148
Homologs : HomoloGeneRNMT
Homology/Alignments : Family Browser (UCSC)RNMT
Gene fusions - Rearrangements
Fusion : QuiverRNMT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNMT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNMT
dbVarRNMT
ClinVarRNMT
1000_GenomesRNMT 
Exome Variant ServerRNMT
ExAC (Exome Aggregation Consortium)ENSG00000101654
GNOMAD BrowserENSG00000101654
Varsome BrowserRNMT
Genetic variants : HAPMAP8731
Genomic Variants (DGV)RNMT [DGVbeta]
DECIPHERRNMT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNMT 
Mutations
ICGC Data PortalRNMT 
TCGA Data PortalRNMT 
Broad Tumor PortalRNMT
OASIS PortalRNMT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNMT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNMT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNMT
DgiDB (Drug Gene Interaction Database)RNMT
DoCM (Curated mutations)RNMT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNMT (select a term)
intoGenRNMT
Cancer3DRNMT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603514   
Orphanet
DisGeNETRNMT
MedgenRNMT
Genetic Testing Registry RNMT
NextProtO43148 [Medical]
TSGene8731
GENETestsRNMT
Target ValidationRNMT
Huge Navigator RNMT [HugePedia]
snp3D : Map Gene to Disease8731
BioCentury BCIQRNMT
ClinGenRNMT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8731
Chemical/Pharm GKB GenePA34448
Clinical trialRNMT
Miscellaneous
canSAR (ICR)RNMT (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNMT
EVEXRNMT
GoPubMedRNMT
iHOPRNMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Aug 16 11:29:02 CEST 2018
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