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RNMTL1 (RNA methyltransferase like 1)

Identity

Other aliasHC90
MRM3
RMTL1
HGNC (Hugo) RNMTL1
LocusID (NCBI) 55178
Atlas_Id 72719
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 685513 and ends at 695741 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DVL2 (17p13.1) / RNMTL1 (17p13.3)RNMTL1 (17p13.3) / DVL2 (17p13.1)RNMTL1 (17p13.3) / GPANK1 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNMTL1   18485
Cards
Entrez_Gene (NCBI)RNMTL1  55178  RNA methyltransferase like 1
AliasesHC90; MRM3; RMTL1
GeneCards (Weizmann)RNMTL1
Ensembl hg19 (Hinxton)ENSG00000171861 [Gene_View]  chr17:685513-695741 [Contig_View]  RNMTL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171861 [Gene_View]  chr17:685513-695741 [Contig_View]  RNMTL1 [Vega]
ICGC DataPortalENSG00000171861
TCGA cBioPortalRNMTL1
AceView (NCBI)RNMTL1
Genatlas (Paris)RNMTL1
WikiGenes55178
SOURCE (Princeton)RNMTL1
Genetics Home Reference (NIH)RNMTL1
Genomic and cartography
GoldenPath hg19 (UCSC)RNMTL1  -     chr17:685513-695741 +  17p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNMTL1  -     17p13.3   [Description]    (hg38-Dec_2013)
EnsemblRNMTL1 - 17p13.3 [CytoView hg19]  RNMTL1 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIRNMTL1 [Mapview hg19]  RNMTL1 [Mapview hg38]
OMIM612600   
Gene and transcription
Genbank (Entrez)AF177344 AK001443 AK222900 AK225128 BC011550
RefSeq transcript (Entrez)NM_018146
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)RNMTL1
Cluster EST : UnigeneHs.182729 [ NCBI ]
CGAP (NCI)Hs.182729
Alternative Splicing GalleryENSG00000171861
Gene ExpressionRNMTL1 [ NCBI-GEO ]   RNMTL1 [ EBI - ARRAY_EXPRESS ]   RNMTL1 [ SEEK ]   RNMTL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNMTL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55178
GTEX Portal (Tissue expression)RNMTL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC36
Splice isoforms : SwissVarQ9HC36
PhosPhoSitePlusQ9HC36
Domains : Interpro (EBI)Alpha/beta_knot_MTases    L30e-like    SpoU_MeTrfase    SpoU_subst-bd    tRNA_m1G_MTases_N   
Domain families : Pfam (Sanger)SpoU_methylase (PF00588)    SpoU_sub_bind (PF08032)   
Domain families : Pfam (NCBI)pfam00588    pfam08032   
Domain families : Smart (EMBL)SpoU_sub_bind (SM00967)  
Conserved Domain (NCBI)RNMTL1
DMDM Disease mutations55178
Blocks (Seattle)RNMTL1
SuperfamilyQ9HC36
Human Protein AtlasENSG00000171861
Peptide AtlasQ9HC36
HPRD15266
IPIIPI00335589   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC36
IntAct (EBI)Q9HC36
FunCoupENSG00000171861
BioGRIDRNMTL1
STRING (EMBL)RNMTL1
ZODIACRNMTL1
Ontologies - Pathways
QuickGOQ9HC36
Ontology : AmiGORNA methylation  protein binding  mitochondrion  rRNA processing  RNA methyltransferase activity  poly(A) RNA binding  
Ontology : EGO-EBIRNA methylation  protein binding  mitochondrion  rRNA processing  RNA methyltransferase activity  poly(A) RNA binding  
NDEx NetworkRNMTL1
Atlas of Cancer Signalling NetworkRNMTL1
Wikipedia pathwaysRNMTL1
Orthology - Evolution
OrthoDB55178
GeneTree (enSembl)ENSG00000171861
Phylogenetic Trees/Animal Genes : TreeFamRNMTL1
HOVERGENQ9HC36
HOGENOMQ9HC36
Homologs : HomoloGeneRNMTL1
Homology/Alignments : Family Browser (UCSC)RNMTL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNMTL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNMTL1
dbVarRNMTL1
ClinVarRNMTL1
1000_GenomesRNMTL1 
Exome Variant ServerRNMTL1
ExAC (Exome Aggregation Consortium)RNMTL1 (select the gene name)
Genetic variants : HAPMAP55178
Genomic Variants (DGV)RNMTL1 [DGVbeta]
DECIPHER (Syndromes)17:685513-695741  ENSG00000171861
CONAN: Copy Number AnalysisRNMTL1 
Mutations
ICGC Data PortalRNMTL1 
TCGA Data PortalRNMTL1 
Broad Tumor PortalRNMTL1
OASIS PortalRNMTL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNMTL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNMTL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RNMTL1
DgiDB (Drug Gene Interaction Database)RNMTL1
DoCM (Curated mutations)RNMTL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNMTL1 (select a term)
intoGenRNMTL1
Cancer3DRNMTL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612600   
Orphanet
MedgenRNMTL1
Genetic Testing Registry RNMTL1
NextProtQ9HC36 [Medical]
TSGene55178
GENETestsRNMTL1
Huge Navigator RNMTL1 [HugePedia]
snp3D : Map Gene to Disease55178
BioCentury BCIQRNMTL1
ClinGenRNMTL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55178
Chemical/Pharm GKB GenePA38341
Clinical trialRNMTL1
Miscellaneous
canSAR (ICR)RNMTL1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNMTL1
EVEXRNMTL1
GoPubMedRNMTL1
iHOPRNMTL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:22 CET 2017

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