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RNPC3 (RNA binding region (RNP1, RRM) containing 3)

Identity

Alias_symbol (synonym)KIAA1839
FLJ20008
RBM40
SNRNP65
Other aliasRNP
HGNC (Hugo) RNPC3
LocusID (NCBI) 55599
Atlas_Id 72720
Location 1p21.1  [Link to chromosome band 1p21]
Location_base_pair Starts at 103525956 and ends at 103555237 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ALK (2p23.2) / RNPC3 (1p21.1)RNPC3 (1p21.1) / KIAA0825 (5q15)RNPC3 (1p21.1) / RPS6 (9p22.1)
RNPC3 (1p21.1) / TTC37 (5q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNPC3   18666
Cards
Entrez_Gene (NCBI)RNPC3  55599  RNA binding region (RNP1, RRM) containing 3
AliasesRBM40; RNP; SNRNP65
GeneCards (Weizmann)RNPC3
Ensembl hg19 (Hinxton)ENSG00000185946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185946 [Gene_View]  chr1:103525956-103555237 [Contig_View]  RNPC3 [Vega]
ICGC DataPortalENSG00000185946
TCGA cBioPortalRNPC3
AceView (NCBI)RNPC3
Genatlas (Paris)RNPC3
WikiGenes55599
SOURCE (Princeton)RNPC3
Genetics Home Reference (NIH)RNPC3
Genomic and cartography
GoldenPath hg38 (UCSC)RNPC3  -     chr1:103525956-103555237 +  1p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNPC3  -     1p21.1   [Description]    (hg19-Feb_2009)
EnsemblRNPC3 - 1p21.1 [CytoView hg19]  RNPC3 - 1p21.1 [CytoView hg38]
Mapping of homologs : NCBIRNPC3 [Mapview hg19]  RNPC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000015 AK057799 AK289844 AL137730 AY099329
RefSeq transcript (Entrez)NM_017619
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNPC3
Cluster EST : UnigeneHs.632423 [ NCBI ]
CGAP (NCI)Hs.632423
Alternative Splicing GalleryENSG00000185946
Gene ExpressionRNPC3 [ NCBI-GEO ]   RNPC3 [ EBI - ARRAY_EXPRESS ]   RNPC3 [ SEEK ]   RNPC3 [ MEM ]
Gene Expression Viewer (FireBrowse)RNPC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55599
GTEX Portal (Tissue expression)RNPC3
Human Protein AtlasENSG00000185946-RNPC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LT9
Splice isoforms : SwissVarQ96LT9
PhosPhoSitePlusQ96LT9
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM40_RRM1    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RNPC3
DMDM Disease mutations55599
Blocks (Seattle)RNPC3
PDB (SRS)3EGN   
PDB (PDBSum)3EGN   
PDB (IMB)3EGN   
PDB (RSDB)3EGN   
Structural Biology KnowledgeBase3EGN   
SCOP (Structural Classification of Proteins)3EGN   
CATH (Classification of proteins structures)3EGN   
SuperfamilyQ96LT9
Human Protein Atlas [tissue]ENSG00000185946-RNPC3 [tissue]
Peptide AtlasQ96LT9
HPRD15267
IPIIPI00514393   IPI00923554   IPI00982394   IPI00985012   IPI00984174   IPI00975519   IPI00983566   
Protein Interaction databases
DIP (DOE-UCLA)Q96LT9
IntAct (EBI)Q96LT9
FunCoupENSG00000185946
BioGRIDRNPC3
STRING (EMBL)RNPC3
ZODIACRNPC3
Ontologies - Pathways
QuickGOQ96LT9
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  nucleus  nucleoplasm  nucleoplasm  U12-type spliceosomal complex  RNA splicing  U12 snRNA binding  developmental process  pre-mRNA intronic binding  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  nucleus  nucleoplasm  nucleoplasm  U12-type spliceosomal complex  RNA splicing  U12 snRNA binding  developmental process  pre-mRNA intronic binding  
NDEx NetworkRNPC3
Atlas of Cancer Signalling NetworkRNPC3
Wikipedia pathwaysRNPC3
Orthology - Evolution
OrthoDB55599
GeneTree (enSembl)ENSG00000185946
Phylogenetic Trees/Animal Genes : TreeFamRNPC3
HOVERGENQ96LT9
HOGENOMQ96LT9
Homologs : HomoloGeneRNPC3
Homology/Alignments : Family Browser (UCSC)RNPC3
Gene fusions - Rearrangements
Tumor Fusion PortalRNPC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNPC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNPC3
dbVarRNPC3
ClinVarRNPC3
1000_GenomesRNPC3 
Exome Variant ServerRNPC3
ExAC (Exome Aggregation Consortium)ENSG00000185946
GNOMAD BrowserENSG00000185946
Genetic variants : HAPMAP55599
Genomic Variants (DGV)RNPC3 [DGVbeta]
DECIPHERRNPC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNPC3 
Mutations
ICGC Data PortalRNPC3 
TCGA Data PortalRNPC3 
Broad Tumor PortalRNPC3
OASIS PortalRNPC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNPC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNPC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNPC3
DgiDB (Drug Gene Interaction Database)RNPC3
DoCM (Curated mutations)RNPC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNPC3 (select a term)
intoGenRNPC3
Cancer3DRNPC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet19209   
DisGeNETRNPC3
MedgenRNPC3
Genetic Testing Registry RNPC3
NextProtQ96LT9 [Medical]
TSGene55599
GENETestsRNPC3
Target ValidationRNPC3
Huge Navigator RNPC3 [HugePedia]
snp3D : Map Gene to Disease55599
BioCentury BCIQRNPC3
ClinGenRNPC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55599
Chemical/Pharm GKB GenePA134865246
Clinical trialRNPC3
Miscellaneous
canSAR (ICR)RNPC3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNPC3
EVEXRNPC3
GoPubMedRNPC3
iHOPRNPC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:37 CET 2017

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