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RNPEPL1 (arginyl aminopeptidase like 1)

Identity

Alias_namesarginyl aminopeptidase (aminopeptidase B)-like 1
Other alias-
HGNC (Hugo) RNPEPL1
LocusID (NCBI) 57140
Atlas_Id 72722
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 240568587 and ends at 240578732 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNPEPL1 (2q37.3) / RNPEPL1 (2q37.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNPEPL1   10079
Cards
Entrez_Gene (NCBI)RNPEPL1  57140  arginyl aminopeptidase like 1
Aliases
GeneCards (Weizmann)RNPEPL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:240568587-240578732 [Contig_View]  RNPEPL1 [Vega]
TCGA cBioPortalRNPEPL1
AceView (NCBI)RNPEPL1
Genatlas (Paris)RNPEPL1
WikiGenes57140
SOURCE (Princeton)RNPEPL1
Genetics Home Reference (NIH)RNPEPL1
Genomic and cartography
GoldenPath hg38 (UCSC)RNPEPL1  -     chr2:240568587-240578732 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNPEPL1  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblRNPEPL1 - 2q37.3 [CytoView hg19]  RNPEPL1 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIRNPEPL1 [Mapview hg19]  RNPEPL1 [Mapview hg38]
OMIM605287   
Gene and transcription
Genbank (Entrez)AF300795 AK001668 AK130185 AK130805 AL512754
RefSeq transcript (Entrez)NM_018226
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNPEPL1
Cluster EST : UnigeneHs.5345 [ NCBI ]
CGAP (NCI)Hs.5345
Gene ExpressionRNPEPL1 [ NCBI-GEO ]   RNPEPL1 [ EBI - ARRAY_EXPRESS ]   RNPEPL1 [ SEEK ]   RNPEPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNPEPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57140
GTEX Portal (Tissue expression)RNPEPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAU8
Splice isoforms : SwissVarQ9HAU8
PhosPhoSitePlusQ9HAU8
Domains : Interpro (EBI)ARM-type_fold    Peptidase_M1    Peptidase_M1_C    Peptidase_M1_N    RNPEPL1   
Domain families : Pfam (Sanger)Leuk-A4-hydro_C (PF09127)    Peptidase_M1 (PF01433)   
Domain families : Pfam (NCBI)pfam09127    pfam01433   
Domain families : Smart (EMBL)Leuk-A4-hydro_C (SM01263)  
Conserved Domain (NCBI)RNPEPL1
DMDM Disease mutations57140
Blocks (Seattle)RNPEPL1
SuperfamilyQ9HAU8
Peptide AtlasQ9HAU8
HPRD07545
IPIIPI00470682   IPI00942095   IPI00893606   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAU8
IntAct (EBI)Q9HAU8
BioGRIDRNPEPL1
STRING (EMBL)RNPEPL1
ZODIACRNPEPL1
Ontologies - Pathways
QuickGOQ9HAU8
Ontology : AmiGOcytoplasm  proteolysis  proteolysis  zinc ion binding  peptide binding  peptide catabolic process  metalloaminopeptidase activity  metalloaminopeptidase activity  
Ontology : EGO-EBIcytoplasm  proteolysis  proteolysis  zinc ion binding  peptide binding  peptide catabolic process  metalloaminopeptidase activity  metalloaminopeptidase activity  
NDEx NetworkRNPEPL1
Atlas of Cancer Signalling NetworkRNPEPL1
Wikipedia pathwaysRNPEPL1
Orthology - Evolution
OrthoDB57140
Phylogenetic Trees/Animal Genes : TreeFamRNPEPL1
HOVERGENQ9HAU8
HOGENOMQ9HAU8
Homologs : HomoloGeneRNPEPL1
Homology/Alignments : Family Browser (UCSC)RNPEPL1
Gene fusions - Rearrangements
Tumor Fusion PortalRNPEPL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNPEPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNPEPL1
dbVarRNPEPL1
ClinVarRNPEPL1
1000_GenomesRNPEPL1 
Exome Variant ServerRNPEPL1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP57140
Genomic Variants (DGV)RNPEPL1 [DGVbeta]
DECIPHERRNPEPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRNPEPL1 
Mutations
ICGC Data PortalRNPEPL1 
TCGA Data PortalRNPEPL1 
Broad Tumor PortalRNPEPL1
OASIS PortalRNPEPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNPEPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNPEPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNPEPL1
DgiDB (Drug Gene Interaction Database)RNPEPL1
DoCM (Curated mutations)RNPEPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNPEPL1 (select a term)
intoGenRNPEPL1
Cancer3DRNPEPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605287   
Orphanet
DisGeNETRNPEPL1
MedgenRNPEPL1
Genetic Testing Registry RNPEPL1
NextProtQ9HAU8 [Medical]
TSGene57140
GENETestsRNPEPL1
Target ValidationRNPEPL1
Huge Navigator RNPEPL1 [HugePedia]
snp3D : Map Gene to Disease57140
BioCentury BCIQRNPEPL1
ClinGenRNPEPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57140
Chemical/Pharm GKB GenePA34452
Clinical trialRNPEPL1
Miscellaneous
canSAR (ICR)RNPEPL1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNPEPL1
EVEXRNPEPL1
GoPubMedRNPEPL1
iHOPRNPEPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:10:09 CET 2017

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