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RNPS1 (RNA binding protein S1, serine-rich domain)

Identity

Alias_namesRNA-binding protein S1, serine-rich domain
Other aliasE5.1
HGNC (Hugo) RNPS1
LocusID (NCBI) 10921
Atlas_Id 72723
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2303117 and ends at 2317338 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GFRA1 (10q25.3) / RNPS1 (16p13.3)RNPS1 (16p13.3) / ZEB2 (2q22.3)RNU12 (22q13.2) / RNPS1 (16p13.3)
ZNF223 (19q13.31) / RNPS1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNPS1   10080
Cards
Entrez_Gene (NCBI)RNPS1  10921  RNA binding protein S1, serine-rich domain
AliasesE5.1
GeneCards (Weizmann)RNPS1
Ensembl hg19 (Hinxton)ENSG00000205937 [Gene_View]  chr16:2303117-2317338 [Contig_View]  RNPS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205937 [Gene_View]  chr16:2303117-2317338 [Contig_View]  RNPS1 [Vega]
ICGC DataPortalENSG00000205937
TCGA cBioPortalRNPS1
AceView (NCBI)RNPS1
Genatlas (Paris)RNPS1
WikiGenes10921
SOURCE (Princeton)RNPS1
Genetics Home Reference (NIH)RNPS1
Genomic and cartography
GoldenPath hg19 (UCSC)RNPS1  -     chr16:2303117-2317338 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNPS1  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblRNPS1 - 16p13.3 [CytoView hg19]  RNPS1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIRNPS1 [Mapview hg19]  RNPS1 [Mapview hg38]
OMIM606447   
Gene and transcription
Genbank (Entrez)AB445101 AF015608 AF247662 AF274003 AK021799
RefSeq transcript (Entrez)NM_001286625 NM_001286626 NM_001286627 NM_006711 NM_080594
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)RNPS1
Cluster EST : UnigeneHs.733012 [ NCBI ]
CGAP (NCI)Hs.733012
Alternative Splicing GalleryENSG00000205937
Gene ExpressionRNPS1 [ NCBI-GEO ]   RNPS1 [ EBI - ARRAY_EXPRESS ]   RNPS1 [ SEEK ]   RNPS1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNPS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10921
GTEX Portal (Tissue expression)RNPS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15287   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15287  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15287
Splice isoforms : SwissVarQ15287
PhosPhoSitePlusQ15287
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RNPS1
DMDM Disease mutations10921
Blocks (Seattle)RNPS1
PDB (SRS)4A8X   
PDB (PDBSum)4A8X   
PDB (IMB)4A8X   
PDB (RSDB)4A8X   
Structural Biology KnowledgeBase4A8X   
SCOP (Structural Classification of Proteins)4A8X   
CATH (Classification of proteins structures)4A8X   
SuperfamilyQ15287
Human Protein AtlasENSG00000205937
Peptide AtlasQ15287
HPRD07341
IPIIPI00033561   IPI00479871   IPI00783594   IPI00015820   
Protein Interaction databases
DIP (DOE-UCLA)Q15287
IntAct (EBI)Q15287
FunCoupENSG00000205937
BioGRIDRNPS1
STRING (EMBL)RNPS1
ZODIACRNPS1
Ontologies - Pathways
QuickGOQ15287
Ontology : AmiGOnucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  mRNA 3'-UTR binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  transcription, DNA-templated  transcription from RNA polymerase II promoter  termination of RNA polymerase II transcription  mRNA export from nucleus  RNA splicing  gene expression  nuclear speck  mRNA 3'-end processing  exon-exon junction complex  positive regulation of apoptotic process  poly(A) RNA binding  negative regulation of mRNA splicing, via spliceosome  ASAP complex  
Ontology : EGO-EBInucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  mRNA 3'-UTR binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  transcription, DNA-templated  transcription from RNA polymerase II promoter  termination of RNA polymerase II transcription  mRNA export from nucleus  RNA splicing  gene expression  nuclear speck  mRNA 3'-end processing  exon-exon junction complex  positive regulation of apoptotic process  poly(A) RNA binding  negative regulation of mRNA splicing, via spliceosome  ASAP complex  
Pathways : KEGGRNA transport    mRNA surveillance pathway   
NDEx NetworkRNPS1
Atlas of Cancer Signalling NetworkRNPS1
Wikipedia pathwaysRNPS1
Orthology - Evolution
OrthoDB10921
GeneTree (enSembl)ENSG00000205937
Phylogenetic Trees/Animal Genes : TreeFamRNPS1
HOVERGENQ15287
HOGENOMQ15287
Homologs : HomoloGeneRNPS1
Homology/Alignments : Family Browser (UCSC)RNPS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRNPS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RNPS1
dbVarRNPS1
ClinVarRNPS1
1000_GenomesRNPS1 
Exome Variant ServerRNPS1
ExAC (Exome Aggregation Consortium)RNPS1 (select the gene name)
Genetic variants : HAPMAP10921
Genomic Variants (DGV)RNPS1 [DGVbeta]
DECIPHER (Syndromes)16:2303117-2317338  ENSG00000205937
CONAN: Copy Number AnalysisRNPS1 
Mutations
ICGC Data PortalRNPS1 
TCGA Data PortalRNPS1 
Broad Tumor PortalRNPS1
OASIS PortalRNPS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRNPS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRNPS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RNPS1
DgiDB (Drug Gene Interaction Database)RNPS1
DoCM (Curated mutations)RNPS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RNPS1 (select a term)
intoGenRNPS1
Cancer3DRNPS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606447   
Orphanet
MedgenRNPS1
Genetic Testing Registry RNPS1
NextProtQ15287 [Medical]
TSGene10921
GENETestsRNPS1
Huge Navigator RNPS1 [HugePedia]
snp3D : Map Gene to Disease10921
BioCentury BCIQRNPS1
ClinGenRNPS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10921
Chemical/Pharm GKB GenePA34453
Clinical trialRNPS1
Miscellaneous
canSAR (ICR)RNPS1 (select the gene name)
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNPS1
EVEXRNPS1
GoPubMedRNPS1
iHOPRNPS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:23 CET 2017

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