Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RNU4ATAC (RNA, U4atac small nuclear (U12-dependent splicing))

Identity

Alias_symbol (synonym)RNU4ATAC1
Other aliasMOPD1
TALS
U4ATAC
HGNC (Hugo) RNU4ATAC
LocusID (NCBI) 100151683
Atlas_Id 72727
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 122288456 and ends at 122288585 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNU4ATAC   34016
Cards
Entrez_Gene (NCBI)RNU4ATAC  100151683  RNA, U4atac small nuclear (U12-dependent splicing)
AliasesMOPD1; RNU4ATAC1; TALS; U4ATAC
GeneCards (Weizmann)RNU4ATAC
Ensembl hg19 (Hinxton)ENSG00000264229 [Gene_View]  chr2:122288456-122288585 [Contig_View]  RNU4ATAC [Vega]
Ensembl hg38 (Hinxton)ENSG00000264229 [Gene_View]  chr2:122288456-122288585 [Contig_View]  RNU4ATAC [Vega]
ICGC DataPortalENSG00000264229
TCGA cBioPortalRNU4ATAC
AceView (NCBI)RNU4ATAC
Genatlas (Paris)RNU4ATAC
WikiGenes100151683
SOURCE (Princeton)RNU4ATAC
Genetics Home Reference (NIH)RNU4ATAC
Genomic and cartography
GoldenPath hg19 (UCSC)RNU4ATAC  -     chr2:122288456-122288585 +  2q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RNU4ATAC  -     2q14.2   [Description]    (hg38-Dec_2013)
EnsemblRNU4ATAC - 2q14.2 [CytoView hg19]  RNU4ATAC - 2q14.2 [CytoView hg38]
Mapping of homologs : NCBIRNU4ATAC [Mapview hg19]  RNU4ATAC [Mapview hg38]
OMIM210710   601428   
Gene and transcription
Genbank (Entrez)U62822
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_029832 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)RNU4ATAC
Cluster EST : UnigeneHs.689638 [ NCBI ]
CGAP (NCI)Hs.689638
Alternative Splicing GalleryENSG00000264229
Gene ExpressionRNU4ATAC [ NCBI-GEO ]   RNU4ATAC [ EBI - ARRAY_EXPRESS ]   RNU4ATAC [ SEEK ]   RNU4ATAC [ MEM ]
Gene Expression Viewer (FireBrowse)RNU4ATAC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100151683
GTEX Portal (Tissue expression)RNU4ATAC
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNU4ATAC
DMDM Disease mutations100151683
Blocks (Seattle)RNU4ATAC
Human Protein AtlasENSG00000264229
Protein Interaction databases
FunCoupENSG00000264229
BioGRIDRNU4ATAC
STRING (EMBL)RNU4ATAC
ZODIACRNU4ATAC
Ontologies - Pathways
Huge Navigator RNU4ATAC [HugePedia]
snp3D : Map Gene to Disease100151683
BioCentury BCIQRNU4ATAC
ClinGenRNU4ATAC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100151683
Chemical/Pharm GKB GenePA162401976
Clinical trialRNU4ATAC
Miscellaneous
canSAR (ICR)RNU4ATAC (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNU4ATAC
EVEXRNU4ATAC
GoPubMedRNU4ATAC
iHOPRNU4ATAC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:24 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.