Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RNU5A-1 (RNA, U5A small nuclear 1)

Identity

Alias_namesRNU5C
RNU5A
RNA, U5C small nuclear
RNA, U5A small nuclear
Alias_symbol (synonym)U5A
U5B1
Other aliasRNU5
HGNC (Hugo) RNU5A-1
LocusID (NCBI) 26831
Atlas_Id 78957
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65296051 and ends at 65296167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNU5A-1   10211
Cards
Entrez_Gene (NCBI)RNU5A-1  26831  RNA, U5A small nuclear 1
AliasesRNU5; RNU5A; RNU5C; U5A; 
U5B1
GeneCards (Weizmann)RNU5A-1
Ensembl hg19 (Hinxton)ENSG00000199568 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000199568 [Gene_View]  chr15:65296051-65296167 [Contig_View]  RNU5A-1 [Vega]
ICGC DataPortalENSG00000199568
TCGA cBioPortalRNU5A-1
AceView (NCBI)RNU5A-1
Genatlas (Paris)RNU5A-1
WikiGenes26831
SOURCE (Princeton)RNU5A-1
Genetics Home Reference (NIH)RNU5A-1
Genomic and cartography
GoldenPath hg38 (UCSC)RNU5A-1  -     chr15:65296051-65296167 +  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNU5A-1  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblRNU5A-1 - 15q22.31 [CytoView hg19]  RNU5A-1 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIRNU5A-1 [Mapview hg19]  RNU5A-1 [Mapview hg38]
OMIM180691   
Gene and transcription
Genbank (Entrez)K03167 X04215
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNU5A-1
Alternative Splicing GalleryENSG00000199568
Gene ExpressionRNU5A-1 [ NCBI-GEO ]   RNU5A-1 [ EBI - ARRAY_EXPRESS ]   RNU5A-1 [ SEEK ]   RNU5A-1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNU5A-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26831
GTEX Portal (Tissue expression)RNU5A-1
Human Protein AtlasENSG00000199568-RNU5A-1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNU5A-1
DMDM Disease mutations26831
Blocks (Seattle)RNU5A-1
Human Protein Atlas [tissue]ENSG00000199568-RNU5A-1 [tissue]
Protein Interaction databases
FunCoupENSG00000199568
BioGRIDRNU5A-1
STRING (EMBL)RNU5A-1
ZODIACRNU5A-1
Ontologies - Pathways
Huge Navigator RNU5A-1 [HugePedia]
snp3D : Map Gene to Disease26831
BioCentury BCIQRNU5A-1
ClinGenRNU5A-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26831
Chemical/Pharm GKB GenePA34578
Clinical trialRNU5A-1
Miscellaneous
canSAR (ICR)RNU5A-1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNU5A-1
EVEXRNU5A-1
GoPubMedRNU5A-1
iHOPRNU5A-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:06 CET 2017

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