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RNU5D-1 (RNA, U5D small nuclear 1)

Identity

Alias_namesRNU5D
RNA, U5D small nuclear
Alias_symbol (synonym)U5DS
U5DL
Other alias
HGNC (Hugo) RNU5D-1
LocusID (NCBI) 26830
Atlas_Id 72729
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44731069 and ends at 44731168 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNU5D-1   10214
Cards
Entrez_Gene (NCBI)RNU5D-1  26830  RNA, U5D small nuclear 1
AliasesRNU5D; U5DL; U5DS
GeneCards (Weizmann)RNU5D-1
Ensembl hg19 (Hinxton)ENSG00000200169 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000200169 [Gene_View]  chr1:44731069-44731168 [Contig_View]  RNU5D-1 [Vega]
ICGC DataPortalENSG00000200169
TCGA cBioPortalRNU5D-1
AceView (NCBI)RNU5D-1
Genatlas (Paris)RNU5D-1
WikiGenes26830
SOURCE (Princeton)RNU5D-1
Genetics Home Reference (NIH)RNU5D-1
Genomic and cartography
GoldenPath hg38 (UCSC)RNU5D-1  -     chr1:44731069-44731168 -  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNU5D-1  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblRNU5D-1 - 1p34.1 [CytoView hg19]  RNU5D-1 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIRNU5D-1 [Mapview hg19]  RNU5D-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)M77838
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNU5D-1
Alternative Splicing GalleryENSG00000200169
Gene ExpressionRNU5D-1 [ NCBI-GEO ]   RNU5D-1 [ EBI - ARRAY_EXPRESS ]   RNU5D-1 [ SEEK ]   RNU5D-1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNU5D-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26830
GTEX Portal (Tissue expression)RNU5D-1
Human Protein AtlasENSG00000200169-RNU5D-1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNU5D-1
DMDM Disease mutations26830
Blocks (Seattle)RNU5D-1
Human Protein Atlas [tissue]ENSG00000200169-RNU5D-1 [tissue]
Protein Interaction databases
FunCoupENSG00000200169
BioGRIDRNU5D-1
STRING (EMBL)RNU5D-1
ZODIACRNU5D-1
Ontologies - Pathways
Huge Navigator RNU5D-1 [HugePedia]
snp3D : Map Gene to Disease26830
BioCentury BCIQRNU5D-1
ClinGenRNU5D-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26830
Chemical/Pharm GKB GenePA34581
Clinical trialRNU5D-1
Miscellaneous
canSAR (ICR)RNU5D-1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNU5D-1
EVEXRNU5D-1
GoPubMedRNU5D-1
iHOPRNU5D-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:25:22 CET 2017

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