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RNU5E-1 (RNA, U5E small nuclear 1)

Identity

Alias_namesRNU5E
RNA, U5E small nuclear
Alias_symbol (synonym)U5E
Other alias
HGNC (Hugo) RNU5E-1
LocusID (NCBI) 26829
Atlas_Id 72730
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 11908154 and ends at 11908272 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNOT1 (16q21) / RNU5E-1 (5q14.1)MTHFD1L (6q25.1) / RNU5E-1 (5q14.1)WDR53 (3q29) / RNU5E-1 (5q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNU5E-1   10215
Cards
Entrez_Gene (NCBI)RNU5E-1  26829  RNA, U5E small nuclear 1
AliasesRNU5E; U5E
GeneCards (Weizmann)RNU5E-1
Ensembl hg19 (Hinxton)ENSG00000199347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000199347 [Gene_View]  chr1:11908154-11908272 [Contig_View]  RNU5E-1 [Vega]
ICGC DataPortalENSG00000199347
TCGA cBioPortalRNU5E-1
AceView (NCBI)RNU5E-1
Genatlas (Paris)RNU5E-1
WikiGenes26829
SOURCE (Princeton)RNU5E-1
Genetics Home Reference (NIH)RNU5E-1
Genomic and cartography
GoldenPath hg38 (UCSC)RNU5E-1  -     chr1:11908154-11908272 +  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNU5E-1  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblRNU5E-1 - 1p36.22 [CytoView hg19]  RNU5E-1 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBIRNU5E-1 [Mapview hg19]  RNU5E-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)M77839
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNU5E-1
Alternative Splicing GalleryENSG00000199347
Gene ExpressionRNU5E-1 [ NCBI-GEO ]   RNU5E-1 [ EBI - ARRAY_EXPRESS ]   RNU5E-1 [ SEEK ]   RNU5E-1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNU5E-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26829
GTEX Portal (Tissue expression)RNU5E-1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNU5E-1
DMDM Disease mutations26829
Blocks (Seattle)RNU5E-1
Human Protein AtlasENSG00000199347
Protein Interaction databases
FunCoupENSG00000199347
BioGRIDRNU5E-1
STRING (EMBL)RNU5E-1
ZODIACRNU5E-1
Ontologies - Pathways
Huge Navigator RNU5E-1 [HugePedia]
snp3D : Map Gene to Disease26829
BioCentury BCIQRNU5E-1
ClinGenRNU5E-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26829
Chemical/Pharm GKB GenePA34582
Clinical trialRNU5E-1
Miscellaneous
canSAR (ICR)RNU5E-1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNU5E-1
EVEXRNU5E-1
GoPubMedRNU5E-1
iHOPRNU5E-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:00 CEST 2017

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