Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RNU5F-1 (RNA, U5F small nuclear 1)

Identity

Alias_namesRNU5F
RNA, U5F small nuclear
Other aliasU5F
HGNC (Hugo) RNU5F-1
LocusID (NCBI) 26828
Atlas_Id 72731
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44721786 and ends at 44721901 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		CTNNA2 (2p12) / RNU5F-1 (1q41)DOCK10 (2q36.2) / RNU5F-1 (1q41)NDUFA4 (7p21.3) / RNU5F-1 (1q41)
RNU5F-1 (1q41) / C6orf62 (6p22.3)RNU5F-1 (1q41) / RCAN2 (6p21.1)RNU5F-1 (1q41) / RNU5F-1 (1q41)
RNU5F-1 (1q41) / SLC1A2 (11p13)TUBA1B (12q13.12) / RNU5F-1 (1q41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RNU5F-1   10216
Cards
Entrez_Gene (NCBI)RNU5F-1  26828  RNA, U5F small nuclear 1
AliasesRNU5F; U5F
GeneCards (Weizmann)RNU5F-1
Ensembl hg19 (Hinxton)ENSG00000199377 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000199377 [Gene_View]  chr1:44721786-44721901 [Contig_View]  RNU5F-1 [Vega]
ICGC DataPortalENSG00000199377
TCGA cBioPortalRNU5F-1
AceView (NCBI)RNU5F-1
Genatlas (Paris)RNU5F-1
WikiGenes26828
SOURCE (Princeton)RNU5F-1
Genetics Home Reference (NIH)RNU5F-1
Genomic and cartography
GoldenPath hg38 (UCSC)RNU5F-1  -     chr1:44721786-44721901 -  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNU5F-1  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblRNU5F-1 - 1p34.1 [CytoView hg19]  RNU5F-1 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIRNU5F-1 [Mapview hg19]  RNU5F-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)M77840
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNU5F-1
Alternative Splicing GalleryENSG00000199377
Gene ExpressionRNU5F-1 [ NCBI-GEO ]   RNU5F-1 [ EBI - ARRAY_EXPRESS ]   RNU5F-1 [ SEEK ]   RNU5F-1 [ MEM ]
Gene Expression Viewer (FireBrowse)RNU5F-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26828
GTEX Portal (Tissue expression)RNU5F-1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNU5F-1
DMDM Disease mutations26828
Blocks (Seattle)RNU5F-1
Human Protein AtlasENSG00000199377
Protein Interaction databases
FunCoupENSG00000199377
BioGRIDRNU5F-1
STRING (EMBL)RNU5F-1
ZODIACRNU5F-1
Ontologies - Pathways
Huge Navigator RNU5F-1 [HugePedia]
snp3D : Map Gene to Disease26828
BioCentury BCIQRNU5F-1
ClinGenRNU5F-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26828
Chemical/Pharm GKB GenePA34583
Clinical trialRNU5F-1
Miscellaneous
canSAR (ICR)RNU5F-1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNU5F-1
EVEXRNU5F-1
GoPubMedRNU5F-1
iHOPRNU5F-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:37:33 CEST 2017
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