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RNU6ATAC (RNA, U6atac small nuclear (U12-dependent splicing))

Identity

Alias_symbol (synonym)RNU6ATAC1
Other aliasU6ATAC
HGNC (Hugo) RNU6ATAC
LocusID (NCBI) 100151684
Atlas_Id 72755
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 134164440 and ends at 134164564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNU6ATAC (9q34.2) / DDX1 (2p24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RNU6ATAC   34017
Cards
Entrez_Gene (NCBI)RNU6ATAC  100151684  RNA, U6atac small nuclear (U12-dependent splicing)
AliasesRNU6ATAC1; U6ATAC
GeneCards (Weizmann)RNU6ATAC
Ensembl hg19 (Hinxton)ENSG00000221676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221676 [Gene_View]  chr9:134164440-134164564 [Contig_View]  RNU6ATAC [Vega]
ICGC DataPortalENSG00000221676
TCGA cBioPortalRNU6ATAC
AceView (NCBI)RNU6ATAC
Genatlas (Paris)RNU6ATAC
WikiGenes100151684
SOURCE (Princeton)RNU6ATAC
Genetics Home Reference (NIH)RNU6ATAC
Genomic and cartography
GoldenPath hg38 (UCSC)RNU6ATAC  -     chr9:134164440-134164564 -  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RNU6ATAC  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblRNU6ATAC - 9q34.2 [CytoView hg19]  RNU6ATAC - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBIRNU6ATAC [Mapview hg19]  RNU6ATAC [Mapview hg38]
OMIM601429   
Gene and transcription
Genbank (Entrez)U62823
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RNU6ATAC
Cluster EST : UnigeneHs.545589 [ NCBI ]
CGAP (NCI)Hs.545589
Alternative Splicing GalleryENSG00000221676
Gene ExpressionRNU6ATAC [ NCBI-GEO ]   RNU6ATAC [ EBI - ARRAY_EXPRESS ]   RNU6ATAC [ SEEK ]   RNU6ATAC [ MEM ]
Gene Expression Viewer (FireBrowse)RNU6ATAC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100151684
GTEX Portal (Tissue expression)RNU6ATAC
Human Protein AtlasENSG00000221676-RNU6ATAC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RNU6ATAC
DMDM Disease mutations100151684
Blocks (Seattle)RNU6ATAC
Human Protein Atlas [tissue]ENSG00000221676-RNU6ATAC [tissue]
Protein Interaction databases
FunCoupENSG00000221676
BioGRIDRNU6ATAC
STRING (EMBL)RNU6ATAC
ZODIACRNU6ATAC
Ontologies - Pathways
Huge Navigator RNU6ATAC [HugePedia]
snp3D : Map Gene to Disease100151684
BioCentury BCIQRNU6ATAC
ClinGenRNU6ATAC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100151684
Chemical/Pharm GKB GenePA162401979
Clinical trialRNU6ATAC
Miscellaneous
canSAR (ICR)RNU6ATAC (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRNU6ATAC
EVEXRNU6ATAC
GoPubMedRNU6ATAC
iHOPRNU6ATAC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:20:37 CET 2017

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