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ROBO3 (roundabout, axon guidance receptor, homolog 3 (Drosophila))

Identity

Other namesHGPPS
HGPS
RBIG1
RIG1
HGNC (Hugo) ROBO3
LocusID (NCBI) 64221
Location 11q24.2
Location_base_pair Starts at 124735305 and ends at 124751370 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ROBO3   13433
Cards
Entrez_Gene (NCBI)ROBO3  64221  roundabout, axon guidance receptor, homolog 3 (Drosophila)
GeneCards (Weizmann)ROBO3
Ensembl (Hinxton)ENSG00000154134 [Gene_View]  chr11:124735305-124751370 [Contig_View]  ROBO3 [Vega]
AceView (NCBI)ROBO3
Genatlas (Paris)ROBO3
WikiGenes64221
SOURCE (Princeton)NM_022370
Genomic and cartography
GoldenPath (UCSC)ROBO3  -  11q24.2   chr11:124735305-124751370 +  11q24.2   [Description]    (hg19-Feb_2009)
EnsemblROBO3 - 11q24.2 [CytoView]
Mapping of homologs : NCBIROBO3 [Mapview]
OMIM607313   608630   
Gene and transcription
Genbank (Entrez)AK024697 AK225076 AK291045 AK295475 AK298792
RefSeq transcript (Entrez)NM_022370
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NG_016214 NT_033899 NW_001838043 NW_004929381
Consensus coding sequences : CCDS (NCBI)ROBO3
Cluster EST : UnigeneHs.435621 [ NCBI ]
CGAP (NCI)Hs.435621
Alternative Splicing : Fast-db (Paris)GSHG0005363
Alternative Splicing GalleryENSG00000154134
Gene ExpressionROBO3 [ NCBI-GEO ]     ROBO3 [ SEEK ]   ROBO3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MS0 (Uniprot)
NextProtQ96MS0  [Medical]
With graphics : InterProQ96MS0
Splice isoforms : SwissVarQ96MS0 (Swissvar)
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)Fibronectin_type3    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub2   
Related proteins : CluSTrQ96MS0
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IGc2 (SM00408)  
DMDM Disease mutations64221
Blocks (Seattle)Q96MS0
Human Protein AtlasENSG00000154134
Peptide AtlasQ96MS0
HPRD10554
IPIIPI00418275   IPI00007176   IPI01010817   
Protein Interaction databases
DIP (DOE-UCLA)Q96MS0
IntAct (EBI)Q96MS0
FunCoupENSG00000154134
BioGRIDROBO3
InParanoidQ96MS0
Interologous Interaction database Q96MS0
IntegromeDBROBO3
STRING (EMBL)ROBO3
Ontologies - Pathways
Ontology : AmiGOneuron migration  axon guidance  axon guidance  integral to membrane  axon midline choice point recognition  axon  protein homodimerization activity  protein heterodimerization activity  
Ontology : EGO-EBIneuron migration  axon guidance  axon guidance  integral to membrane  axon midline choice point recognition  axon  protein homodimerization activity  protein heterodimerization activity  
Pathways : KEGGAxon guidance   
REACTOMEROBO3
Protein Interaction DatabaseROBO3
Wikipedia pathwaysROBO3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ROBO3
SNP (GeneSNP Utah)ROBO3
SNP : HGBaseROBO3
Genetic variants : HAPMAPROBO3
1000_GenomesROBO3 
ICGC programENSG00000154134 
Somatic Mutations in Cancer : COSMICROBO3 
CONAN: Copy Number AnalysisROBO3 
Mutations and Diseases : HGMDROBO3
OMIM607313    608630   
GENETestsROBO3
Disease Genetic AssociationROBO3
Huge Navigator ROBO3 [HugePedia]  ROBO3 [HugeCancerGEM]
Genomic VariantsROBO3  ROBO3 [DGVbeta]
Exome VariantROBO3
dbVarROBO3
ClinVarROBO3
snp3D : Map Gene to Disease64221
General knowledge
Homologs : HomoloGeneROBO3
Homology/Alignments : Family Browser (UCSC)ROBO3
Phylogenetic Trees/Animal Genes : TreeFamROBO3
Chemical/Protein Interactions : CTD64221
Chemical/Pharm GKB GenePA134896648
Clinical trialROBO3
Cancer Resource (Charite)ENSG00000154134
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMineROBO3
iHOPROBO3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:46:33 CEST 2014

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