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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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ROBO3 (roundabout, axon guidance receptor, homolog 3 (Drosophila))

Identity

Other namesHGPPS
HGPS
RBIG1
RIG1
HGNC (Hugo) ROBO3
LocusID (NCBI) 64221
Location 11q24.2
Location_base_pair Starts at 124735305 and ends at 124751370 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ROBO3   13433
Cards
Entrez_Gene (NCBI)ROBO3  64221  roundabout, axon guidance receptor, homolog 3 (Drosophila)
GeneCards (Weizmann)ROBO3
Ensembl hg19 (Hinxton)ENSG00000154134 [Gene_View]  chr11:124735305-124751370 [Contig_View]  ROBO3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154134 [Gene_View]  chr11:124735305-124751370 [Contig_View]  ROBO3 [Vega]
ICGC DataPortalENSG00000154134
cBioPortalROBO3
AceView (NCBI)ROBO3
Genatlas (Paris)ROBO3
WikiGenes64221
SOURCE (Princeton)ROBO3
Genomic and cartography
GoldenPath hg19 (UCSC)ROBO3  -     chr11:124735305-124751370 +  11q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ROBO3  -     11q24.2   [Description]    (hg38-Dec_2013)
EnsemblROBO3 - 11q24.2 [CytoView hg19]  ROBO3 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIROBO3 [Mapview hg19]  ROBO3 [Mapview hg38]
OMIM607313   608630   
Gene and transcription
Genbank (Entrez)AK024697 AK225076 AK291045 AK295475 AK298792
RefSeq transcript (Entrez)NM_022370
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_016214 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)ROBO3
Cluster EST : UnigeneHs.435621 [ NCBI ]
CGAP (NCI)Hs.435621
Alternative Splicing : Fast-db (Paris)GSHG0005363
Alternative Splicing GalleryENSG00000154134
Gene ExpressionROBO3 [ NCBI-GEO ]     ROBO3 [ SEEK ]   ROBO3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MS0 (Uniprot)
NextProtQ96MS0  [Medical]
With graphics : InterProQ96MS0
Splice isoforms : SwissVarQ96MS0 (Swissvar)
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub2   
Related proteins : CluSTrQ96MS0
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IGc2 (SM00408)  
DMDM Disease mutations64221
Blocks (Seattle)Q96MS0
Human Protein AtlasENSG00000154134
Peptide AtlasQ96MS0
HPRD10554
IPIIPI00418275   IPI00007176   IPI01010817   
Protein Interaction databases
DIP (DOE-UCLA)Q96MS0
IntAct (EBI)Q96MS0
FunCoupENSG00000154134
BioGRIDROBO3
IntegromeDBROBO3
STRING (EMBL)ROBO3
Ontologies - Pathways
QuickGOQ96MS0
Ontology : AmiGOneuron migration  axon guidance  axon guidance  integral component of membrane  axon midline choice point recognition  axon  commissural neuron axon guidance  
Ontology : EGO-EBIneuron migration  axon guidance  axon guidance  integral component of membrane  axon midline choice point recognition  axon  commissural neuron axon guidance  
Pathways : KEGGAxon guidance   
Protein Interaction DatabaseROBO3
DoCM (Curated mutations)ROBO3
Wikipedia pathwaysROBO3
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerROBO3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ROBO3
dbVarROBO3
ClinVarROBO3
1000_GenomesROBO3 
Exome Variant ServerROBO3
SNP (GeneSNP Utah)ROBO3
SNP : HGBaseROBO3
Genetic variants : HAPMAPROBO3
Genomic Variants (DGV)ROBO3 [DGVbeta]
Mutations
ICGC Data PortalENSG00000154134 
Somatic Mutations in Cancer : COSMICROBO3 
CONAN: Copy Number AnalysisROBO3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:124735305-124751370
Mutations and Diseases : HGMDROBO3
OMIM607313    608630   
MedgenROBO3
NextProtQ96MS0 [Medical]
GENETestsROBO3
Disease Genetic AssociationROBO3
Huge Navigator ROBO3 [HugePedia]  ROBO3 [HugeCancerGEM]
snp3D : Map Gene to Disease64221
DGIdb (Drug Gene Interaction db)ROBO3
General knowledge
Homologs : HomoloGeneROBO3
Homology/Alignments : Family Browser (UCSC)ROBO3
Phylogenetic Trees/Animal Genes : TreeFamROBO3
Chemical/Protein Interactions : CTD64221
Chemical/Pharm GKB GenePA134896648
Clinical trialROBO3
Cancer Resource (Charite)ENSG00000154134
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMineROBO3
GoPubMedROBO3
iHOPROBO3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:09:52 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.