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ROGDI (rogdi homolog)

Identity

Alias_namesrogdi homolog (Drosophila)
Alias_symbol (synonym)FLJ22386
Other aliasKTZS
HGNC (Hugo) ROGDI
LocusID (NCBI) 79641
Atlas_Id 56518
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4796962 and ends at 4802950 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ROGDI   29478
LRG (Locus Reference Genomic)LRG_455
Cards
Entrez_Gene (NCBI)ROGDI  79641  rogdi homolog
AliasesKTZS
GeneCards (Weizmann)ROGDI
Ensembl hg19 (Hinxton)ENSG00000067836 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000067836 [Gene_View]  chr16:4796962-4802950 [Contig_View]  ROGDI [Vega]
ICGC DataPortalENSG00000067836
TCGA cBioPortalROGDI
AceView (NCBI)ROGDI
Genatlas (Paris)ROGDI
WikiGenes79641
SOURCE (Princeton)ROGDI
Genetics Home Reference (NIH)ROGDI
Genomic and cartography
GoldenPath hg38 (UCSC)ROGDI  -     chr16:4796962-4802950 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ROGDI  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblROGDI - 16p13.3 [CytoView hg19]  ROGDI - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIROGDI [Mapview hg19]  ROGDI [Mapview hg38]
OMIM226750   614574   
Gene and transcription
Genbank (Entrez)AA740842 AK026039 AK054707 AK098348 AK296334
RefSeq transcript (Entrez)NM_024589
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ROGDI
Cluster EST : UnigeneHs.459795 [ NCBI ]
CGAP (NCI)Hs.459795
Alternative Splicing GalleryENSG00000067836
Gene ExpressionROGDI [ NCBI-GEO ]   ROGDI [ EBI - ARRAY_EXPRESS ]   ROGDI [ SEEK ]   ROGDI [ MEM ]
Gene Expression Viewer (FireBrowse)ROGDI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79641
GTEX Portal (Tissue expression)ROGDI
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZN7
Splice isoforms : SwissVarQ9GZN7
PhosPhoSitePlusQ9GZN7
Domains : Interpro (EBI)RAVE2/Rogdi   
Domain families : Pfam (Sanger)Rogdi_lz (PF10259)   
Domain families : Pfam (NCBI)pfam10259   
Conserved Domain (NCBI)ROGDI
DMDM Disease mutations79641
Blocks (Seattle)ROGDI
SuperfamilyQ9GZN7
Human Protein AtlasENSG00000067836
Peptide AtlasQ9GZN7
HPRD13388
IPIIPI00645577   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZN7
IntAct (EBI)Q9GZN7
FunCoupENSG00000067836
BioGRIDROGDI
STRING (EMBL)ROGDI
ZODIACROGDI
Ontologies - Pathways
QuickGOQ9GZN7
Ontology : AmiGOintracellular  nuclear envelope  brain development  positive regulation of cell proliferation  neurogenesis  hemopoiesis  odontogenesis of dentin-containing tooth  
Ontology : EGO-EBIintracellular  nuclear envelope  brain development  positive regulation of cell proliferation  neurogenesis  hemopoiesis  odontogenesis of dentin-containing tooth  
NDEx NetworkROGDI
Atlas of Cancer Signalling NetworkROGDI
Wikipedia pathwaysROGDI
Orthology - Evolution
OrthoDB79641
GeneTree (enSembl)ENSG00000067836
Phylogenetic Trees/Animal Genes : TreeFamROGDI
HOVERGENQ9GZN7
HOGENOMQ9GZN7
Homologs : HomoloGeneROGDI
Homology/Alignments : Family Browser (UCSC)ROGDI
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerROGDI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ROGDI
dbVarROGDI
ClinVarROGDI
1000_GenomesROGDI 
Exome Variant ServerROGDI
ExAC (Exome Aggregation Consortium)ROGDI (select the gene name)
Genetic variants : HAPMAP79641
Genomic Variants (DGV)ROGDI [DGVbeta]
DECIPHERROGDI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisROGDI 
Mutations
ICGC Data PortalROGDI 
TCGA Data PortalROGDI 
Broad Tumor PortalROGDI
OASIS PortalROGDI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICROGDI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDROGDI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ROGDI
DgiDB (Drug Gene Interaction Database)ROGDI
DoCM (Curated mutations)ROGDI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ROGDI (select a term)
intoGenROGDI
Cancer3DROGDI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM226750    614574   
Orphanet1198   
MedgenROGDI
Genetic Testing Registry ROGDI
NextProtQ9GZN7 [Medical]
TSGene79641
GENETestsROGDI
Target ValidationROGDI
Huge Navigator ROGDI [HugePedia]
snp3D : Map Gene to Disease79641
BioCentury BCIQROGDI
ClinGenROGDI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79641
Chemical/Pharm GKB GenePA143485597
Clinical trialROGDI
Miscellaneous
canSAR (ICR)ROGDI (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineROGDI
EVEXROGDI
GoPubMedROGDI
iHOPROGDI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:41 CEST 2017

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