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ROM1 (retinal outer segment membrane protein 1)

Identity

Alias_symbol (synonym)TSPAN23
ROM
Other aliasROSP1
RP7
HGNC (Hugo) ROM1
LocusID (NCBI) 6094
Atlas_Id 72764
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62380213 and ends at 62382592 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ROM1   10254
Cards
Entrez_Gene (NCBI)ROM1  6094  retinal outer segment membrane protein 1
AliasesROM; ROSP1; RP7; TSPAN23
GeneCards (Weizmann)ROM1
Ensembl hg19 (Hinxton)ENSG00000149489 [Gene_View]  chr11:62380213-62382592 [Contig_View]  ROM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149489 [Gene_View]  chr11:62380213-62382592 [Contig_View]  ROM1 [Vega]
ICGC DataPortalENSG00000149489
TCGA cBioPortalROM1
AceView (NCBI)ROM1
Genatlas (Paris)ROM1
WikiGenes6094
SOURCE (Princeton)ROM1
Genetics Home Reference (NIH)ROM1
Genomic and cartography
GoldenPath hg19 (UCSC)ROM1  -     chr11:62380213-62382592 +  11q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ROM1  -     11q12.3   [Description]    (hg38-Dec_2013)
EnsemblROM1 - 11q12.3 [CytoView hg19]  ROM1 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBIROM1 [Mapview hg19]  ROM1 [Mapview hg38]
OMIM180721   268000   608133   
Gene and transcription
Genbank (Entrez)AK313674 BC008100 BC036268 BU731899 DC335199
RefSeq transcript (Entrez)NM_000327
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_009845 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)ROM1
Cluster EST : UnigeneHs.281564 [ NCBI ]
CGAP (NCI)Hs.281564
Alternative Splicing GalleryENSG00000149489
Gene ExpressionROM1 [ NCBI-GEO ]   ROM1 [ EBI - ARRAY_EXPRESS ]   ROM1 [ SEEK ]   ROM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ROM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6094
GTEX Portal (Tissue expression)ROM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03395   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03395  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03395
Splice isoforms : SwissVarQ03395
PhosPhoSitePlusQ03395
Domaine pattern : Prosite (Expaxy)RDS_ROM1 (PS00930)   
Domains : Interpro (EBI)Peripherin/rom-1    Peripherin/rom-1_CS    Tetraspanin/Peripherin    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)ROM1
DMDM Disease mutations6094
Blocks (Seattle)ROM1
SuperfamilyQ03395
Human Protein AtlasENSG00000149489
Peptide AtlasQ03395
HPRD01616
IPIIPI00010342   IPI00983279   IPI00984453   IPI00977663   
Protein Interaction databases
DIP (DOE-UCLA)Q03395
IntAct (EBI)Q03395
FunCoupENSG00000149489
BioGRIDROM1
STRING (EMBL)ROM1
ZODIACROM1
Ontologies - Pathways
QuickGOQ03395
Ontology : AmiGOintegral component of plasma membrane  cell adhesion  visual perception  regulation of gene expression  photoreceptor outer segment membrane  camera-type eye photoreceptor cell differentiation  retina vasculature development in camera-type eye  
Ontology : EGO-EBIintegral component of plasma membrane  cell adhesion  visual perception  regulation of gene expression  photoreceptor outer segment membrane  camera-type eye photoreceptor cell differentiation  retina vasculature development in camera-type eye  
NDEx NetworkROM1
Atlas of Cancer Signalling NetworkROM1
Wikipedia pathwaysROM1
Orthology - Evolution
OrthoDB6094
GeneTree (enSembl)ENSG00000149489
Phylogenetic Trees/Animal Genes : TreeFamROM1
HOVERGENQ03395
HOGENOMQ03395
Homologs : HomoloGeneROM1
Homology/Alignments : Family Browser (UCSC)ROM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerROM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ROM1
dbVarROM1
ClinVarROM1
1000_GenomesROM1 
Exome Variant ServerROM1
ExAC (Exome Aggregation Consortium)ROM1 (select the gene name)
Genetic variants : HAPMAP6094
Genomic Variants (DGV)ROM1 [DGVbeta]
DECIPHER (Syndromes)11:62380213-62382592  ENSG00000149489
CONAN: Copy Number AnalysisROM1 
Mutations
ICGC Data PortalROM1 
TCGA Data PortalROM1 
Broad Tumor PortalROM1
OASIS PortalROM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICROM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDROM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch ROM1
DgiDB (Drug Gene Interaction Database)ROM1
DoCM (Curated mutations)ROM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ROM1 (select a term)
intoGenROM1
Cancer3DROM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180721    268000    608133   
Orphanet659   
MedgenROM1
Genetic Testing Registry ROM1
NextProtQ03395 [Medical]
TSGene6094
GENETestsROM1
Huge Navigator ROM1 [HugePedia]
snp3D : Map Gene to Disease6094
BioCentury BCIQROM1
ClinGenROM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6094
Chemical/Pharm GKB GenePA34626
Clinical trialROM1
Miscellaneous
canSAR (ICR)ROM1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineROM1
EVEXROM1
GoPubMedROM1
iHOPROM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:32 CET 2017

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