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ROM1 (retinal outer segment membrane protein 1)

Identity

Alias (NCBI)ROM
ROSP1
RP7
TSPAN23
HGNC (Hugo) ROM1
HGNC Alias symbTSPAN23
ROM
LocusID (NCBI) 6094
Atlas_Id 72764
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62612741 and ends at 62615121 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ROM1   10254
Cards
Entrez_Gene (NCBI)ROM1    retinal outer segment membrane protein 1
AliasesROM; ROSP1; RP7; TSPAN23
GeneCards (Weizmann)ROM1
Ensembl hg19 (Hinxton)ENSG00000149489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149489 [Gene_View]  ENSG00000149489 [Sequence]  chr11:62612741-62615121 [Contig_View]  ROM1 [Vega]
ICGC DataPortalENSG00000149489
TCGA cBioPortalROM1
AceView (NCBI)ROM1
Genatlas (Paris)ROM1
SOURCE (Princeton)ROM1
Genetics Home Reference (NIH)ROM1
Genomic and cartography
GoldenPath hg38 (UCSC)ROM1  -     chr11:62612741-62615121 +  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ROM1  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathROM1 - 11q12.3 [CytoView hg19]  ROM1 - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000149489
Genome Data Viewer NCBIROM1 [Mapview hg19]  
OMIM180721   268000   608133   
Gene and transcription
Genbank (Entrez)AK313674 BC008100 BC036268 BU731899 DC335199
RefSeq transcript (Entrez)NM_000327
Consensus coding sequences : CCDS (NCBI)ROM1
Gene ExpressionROM1 [ NCBI-GEO ]   ROM1 [ EBI - ARRAY_EXPRESS ]   ROM1 [ SEEK ]   ROM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ROM1 [ Firebrowse - Broad ]
GenevisibleExpression of ROM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6094
GTEX Portal (Tissue expression)ROM1
Human Protein AtlasENSG00000149489-ROM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03395   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03395  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03395
PhosPhoSitePlusQ03395
Domaine pattern : Prosite (Expaxy)RDS_ROM1 (PS00930)   
Domains : Interpro (EBI)Peripherin/rom-1    Peripherin/rom-1_CS    Peripherin_LEL    Tetraspanin/Peripherin    Tetraspanin_EC2_sf   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)ROM1
SuperfamilyQ03395
AlphaFold pdb e-kbQ03395   
Human Protein Atlas [tissue]ENSG00000149489-ROM1 [tissue]
HPRD01616
Protein Interaction databases
DIP (DOE-UCLA)Q03395
IntAct (EBI)Q03395
BioGRIDROM1
STRING (EMBL)ROM1
ZODIACROM1
Ontologies - Pathways
QuickGOQ03395
Ontology : AmiGOprotein binding  integral component of plasma membrane  cell adhesion  visual perception  regulation of gene expression  photoreceptor cell outer segment organization  photoreceptor outer segment membrane  protein homodimerization activity  detection of light stimulus involved in visual perception  protein homooligomerization  protein heterooligomerization  camera-type eye photoreceptor cell differentiation  retina vasculature development in camera-type eye  protein localization to photoreceptor outer segment  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  cell adhesion  visual perception  regulation of gene expression  photoreceptor cell outer segment organization  photoreceptor outer segment membrane  protein homodimerization activity  detection of light stimulus involved in visual perception  protein homooligomerization  protein heterooligomerization  camera-type eye photoreceptor cell differentiation  retina vasculature development in camera-type eye  protein localization to photoreceptor outer segment  
NDEx NetworkROM1
Atlas of Cancer Signalling NetworkROM1
Wikipedia pathwaysROM1
Orthology - Evolution
OrthoDB6094
GeneTree (enSembl)ENSG00000149489
Phylogenetic Trees/Animal Genes : TreeFamROM1
Homologs : HomoloGeneROM1
Homology/Alignments : Family Browser (UCSC)ROM1
Gene fusions - Rearrangements
Fusion : QuiverROM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerROM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ROM1
dbVarROM1
ClinVarROM1
MonarchROM1
1000_GenomesROM1 
Exome Variant ServerROM1
GNOMAD BrowserENSG00000149489
Varsome BrowserROM1
ACMGROM1 variants
VarityQ03395
Genomic Variants (DGV)ROM1 [DGVbeta]
DECIPHERROM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisROM1 
Mutations
ICGC Data PortalROM1 
TCGA Data PortalROM1 
Broad Tumor PortalROM1
OASIS PortalROM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICROM1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DROM1
Mutations and Diseases : HGMDROM1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaROM1
DgiDB (Drug Gene Interaction Database)ROM1
DoCM (Curated mutations)ROM1
CIViC (Clinical Interpretations of Variants in Cancer)ROM1
Cancer3DROM1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180721    268000    608133   
Orphanet659   
DisGeNETROM1
MedgenROM1
Genetic Testing Registry ROM1
NextProtQ03395 [Medical]
GENETestsROM1
Target ValidationROM1
Huge Navigator ROM1 [HugePedia]
ClinGenROM1
Clinical trials, drugs, therapy
MyCancerGenomeROM1
Protein Interactions : CTDROM1
Pharm GKB GenePA34626
PharosQ03395
Clinical trialROM1
Miscellaneous
canSAR (ICR)ROM1
HarmonizomeROM1
DataMed IndexROM1
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXROM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:03 CEST 2021

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