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ROMO1 (reactive oxygen species modulator 1)

Identity

Alias_namesC20orf52
chromosome 20 open reading frame 52
Alias_symbol (synonym)bA353C18.2
MTGMP
Other aliasMTGM
HGNC (Hugo) ROMO1
LocusID (NCBI) 140823
Atlas_Id 50117
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 34287232 and ends at 34288902 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HIF1A (14q23.2) / ROMO1 (20q11.22)NDUFAB1 (16p12.2) / ROMO1 (20q11.22)ROMO1 (20q11.22) / MAPKAPK5 (12q24.12)
SRR (17p13.3) / ROMO1 (20q11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ROMO1   16185
Cards
Entrez_Gene (NCBI)ROMO1  140823  reactive oxygen species modulator 1
AliasesC20orf52; MTGM; MTGMP; bA353C18.2
GeneCards (Weizmann)ROMO1
Ensembl hg19 (Hinxton)ENSG00000125995 [Gene_View]  chr20:34287232-34288902 [Contig_View]  ROMO1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125995 [Gene_View]  chr20:34287232-34288902 [Contig_View]  ROMO1 [Vega]
ICGC DataPortalENSG00000125995
TCGA cBioPortalROMO1
AceView (NCBI)ROMO1
Genatlas (Paris)ROMO1
WikiGenes140823
SOURCE (Princeton)ROMO1
Genetics Home Reference (NIH)ROMO1
Genomic and cartography
GoldenPath hg19 (UCSC)ROMO1  -     chr20:34287232-34288902 +  20q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ROMO1  -     20q11.22   [Description]    (hg38-Dec_2013)
EnsemblROMO1 - 20q11.22 [CytoView hg19]  ROMO1 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIROMO1 [Mapview hg19]  ROMO1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000548 AM397244 AM397245 AM397246 BC008488
RefSeq transcript (Entrez)NM_080748
RefSeq genomic (Entrez)NC_000020 NC_018931 NG_033237 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)ROMO1
Cluster EST : UnigeneHs.472564 [ NCBI ]
CGAP (NCI)Hs.472564
Alternative Splicing GalleryENSG00000125995
Gene ExpressionROMO1 [ NCBI-GEO ]   ROMO1 [ EBI - ARRAY_EXPRESS ]   ROMO1 [ SEEK ]   ROMO1 [ MEM ]
Gene Expression Viewer (FireBrowse)ROMO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140823
GTEX Portal (Tissue expression)ROMO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60602   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60602  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60602
Splice isoforms : SwissVarP60602
PhosPhoSitePlusP60602
Domains : Interpro (EBI)Romo1   
Domain families : Pfam (Sanger)Romo1 (PF10247)   
Domain families : Pfam (NCBI)pfam10247   
Conserved Domain (NCBI)ROMO1
DMDM Disease mutations140823
Blocks (Seattle)ROMO1
SuperfamilyP60602
Human Protein AtlasENSG00000125995
Peptide AtlasP60602
HPRD12774
IPIIPI00016046   IPI00515096   
Protein Interaction databases
DIP (DOE-UCLA)P60602
IntAct (EBI)P60602
FunCoupENSG00000125995
BioGRIDROMO1
STRING (EMBL)ROMO1
ZODIACROMO1
Ontologies - Pathways
QuickGOP60602
Ontology : AmiGOreplicative cell aging  molecular_function  mitochondrion  mitochondrial inner membrane  positive regulation of cell proliferation  integral component of membrane  cellular response to reactive oxygen species  defense response to bacterium  positive regulation of reactive oxygen species metabolic process  
Ontology : EGO-EBIreplicative cell aging  molecular_function  mitochondrion  mitochondrial inner membrane  positive regulation of cell proliferation  integral component of membrane  cellular response to reactive oxygen species  defense response to bacterium  positive regulation of reactive oxygen species metabolic process  
NDEx NetworkROMO1
Atlas of Cancer Signalling NetworkROMO1
Wikipedia pathwaysROMO1
Orthology - Evolution
OrthoDB140823
GeneTree (enSembl)ENSG00000125995
Phylogenetic Trees/Animal Genes : TreeFamROMO1
HOVERGENP60602
HOGENOMP60602
Homologs : HomoloGeneROMO1
Homology/Alignments : Family Browser (UCSC)ROMO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerROMO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ROMO1
dbVarROMO1
ClinVarROMO1
1000_GenomesROMO1 
Exome Variant ServerROMO1
ExAC (Exome Aggregation Consortium)ROMO1 (select the gene name)
Genetic variants : HAPMAP140823
Genomic Variants (DGV)ROMO1 [DGVbeta]
DECIPHER (Syndromes)20:34287232-34288902  ENSG00000125995
CONAN: Copy Number AnalysisROMO1 
Mutations
ICGC Data PortalROMO1 
TCGA Data PortalROMO1 
Broad Tumor PortalROMO1
OASIS PortalROMO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICROMO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDROMO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ROMO1
DgiDB (Drug Gene Interaction Database)ROMO1
DoCM (Curated mutations)ROMO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ROMO1 (select a term)
intoGenROMO1
Cancer3DROMO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenROMO1
Genetic Testing Registry ROMO1
NextProtP60602 [Medical]
TSGene140823
GENETestsROMO1
Huge Navigator ROMO1 [HugePedia]
snp3D : Map Gene to Disease140823
BioCentury BCIQROMO1
ClinGenROMO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140823
Chemical/Pharm GKB GenePA164725540
Clinical trialROMO1
Miscellaneous
canSAR (ICR)ROMO1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineROMO1
EVEXROMO1
GoPubMedROMO1
iHOPROMO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:25:30 CET 2017

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