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ROPN1 (rhophilin associated tail protein 1)

Identity

Alias_namesropporin
Alias_symbol (synonym)ODF6
ropporin
ROPN1A
CT91
Other aliasRHPNAP1
HGNC (Hugo) ROPN1
LocusID (NCBI) 54763
Atlas_Id 49887
Location 3q21.1  [Link to chromosome band 3q21]
Location_base_pair Starts at 123969016 and ends at 123992170 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ROPN1 (3q21.1) / PLXNB3 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ROPN1   17692
Cards
Entrez_Gene (NCBI)ROPN1  54763  rhophilin associated tail protein 1
AliasesCT91; ODF6; RHPNAP1; ROPN1A; 
ropporin
GeneCards (Weizmann)ROPN1
Ensembl hg19 (Hinxton)ENSG00000065371 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065371 [Gene_View]  chr3:123969016-123992170 [Contig_View]  ROPN1 [Vega]
ICGC DataPortalENSG00000065371
TCGA cBioPortalROPN1
AceView (NCBI)ROPN1
Genatlas (Paris)ROPN1
WikiGenes54763
SOURCE (Princeton)ROPN1
Genetics Home Reference (NIH)ROPN1
Genomic and cartography
GoldenPath hg38 (UCSC)ROPN1  -     chr3:123969016-123992170 -  3q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ROPN1  -     3q21.1   [Description]    (hg19-Feb_2009)
EnsemblROPN1 - 3q21.1 [CytoView hg19]  ROPN1 - 3q21.1 [CytoView hg38]
Mapping of homologs : NCBIROPN1 [Mapview hg19]  ROPN1 [Mapview hg38]
OMIM611757   
Gene and transcription
Genbank (Entrez)AF303889 AK310283 AL133624 BC067767 BC111005
RefSeq transcript (Entrez)NM_001317774 NM_001317775 NM_017578
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ROPN1
Cluster EST : UnigeneHs.733553 [ NCBI ]
CGAP (NCI)Hs.733553
Alternative Splicing GalleryENSG00000065371
Gene ExpressionROPN1 [ NCBI-GEO ]   ROPN1 [ EBI - ARRAY_EXPRESS ]   ROPN1 [ SEEK ]   ROPN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ROPN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54763
GTEX Portal (Tissue expression)ROPN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAT0
Splice isoforms : SwissVarQ9HAT0
PhosPhoSitePlusQ9HAT0
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ROPN1
DMDM Disease mutations54763
Blocks (Seattle)ROPN1
SuperfamilyQ9HAT0
Human Protein AtlasENSG00000065371
Peptide AtlasQ9HAT0
HPRD15269
IPIIPI00014258   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAT0
IntAct (EBI)Q9HAT0
FunCoupENSG00000065371
BioGRIDROPN1
STRING (EMBL)ROPN1
ZODIACROPN1
Ontologies - Pathways
QuickGOQ9HAT0
Ontology : AmiGOprotein binding  nucleus  cytoplasm  identical protein binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  identical protein binding  
NDEx NetworkROPN1
Atlas of Cancer Signalling NetworkROPN1
Wikipedia pathwaysROPN1
Orthology - Evolution
OrthoDB54763
GeneTree (enSembl)ENSG00000065371
Phylogenetic Trees/Animal Genes : TreeFamROPN1
HOVERGENQ9HAT0
HOGENOMQ9HAT0
Homologs : HomoloGeneROPN1
Homology/Alignments : Family Browser (UCSC)ROPN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerROPN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ROPN1
dbVarROPN1
ClinVarROPN1
1000_GenomesROPN1 
Exome Variant ServerROPN1
ExAC (Exome Aggregation Consortium)ROPN1 (select the gene name)
Genetic variants : HAPMAP54763
Genomic Variants (DGV)ROPN1 [DGVbeta]
DECIPHERROPN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisROPN1 
Mutations
ICGC Data PortalROPN1 
TCGA Data PortalROPN1 
Broad Tumor PortalROPN1
OASIS PortalROPN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICROPN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDROPN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ROPN1
DgiDB (Drug Gene Interaction Database)ROPN1
DoCM (Curated mutations)ROPN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ROPN1 (select a term)
intoGenROPN1
Cancer3DROPN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611757   
Orphanet
MedgenROPN1
Genetic Testing Registry ROPN1
NextProtQ9HAT0 [Medical]
TSGene54763
GENETestsROPN1
Target ValidationROPN1
Huge Navigator ROPN1 [HugePedia]
snp3D : Map Gene to Disease54763
BioCentury BCIQROPN1
ClinGenROPN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54763
Chemical/Pharm GKB GenePA134952827
Clinical trialROPN1
Miscellaneous
canSAR (ICR)ROPN1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineROPN1
EVEXROPN1
GoPubMedROPN1
iHOPROPN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:13:17 CEST 2017

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