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ROPN1B (rhophilin associated tail protein 1B)

Identity

Alias_namesropporin
Other alias-
HGNC (Hugo) ROPN1B
LocusID (NCBI) 152015
Atlas_Id 56001
Location 3q21.2  [Link to chromosome band 3q21]
Location_base_pair Starts at 125969144 and ends at 125983453 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ROPN1B   31927
Cards
Entrez_Gene (NCBI)ROPN1B  152015  rhophilin associated tail protein 1B
Aliases
GeneCards (Weizmann)ROPN1B
Ensembl hg19 (Hinxton)ENSG00000114547 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114547 [Gene_View]  chr3:125969144-125983453 [Contig_View]  ROPN1B [Vega]
ICGC DataPortalENSG00000114547
TCGA cBioPortalROPN1B
AceView (NCBI)ROPN1B
Genatlas (Paris)ROPN1B
WikiGenes152015
SOURCE (Princeton)ROPN1B
Genetics Home Reference (NIH)ROPN1B
Genomic and cartography
GoldenPath hg38 (UCSC)ROPN1B  -     chr3:125969144-125983453 +  3q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ROPN1B  -     3q21.2   [Description]    (hg19-Feb_2009)
EnsemblROPN1B - 3q21.2 [CytoView hg19]  ROPN1B - 3q21.2 [CytoView hg38]
Mapping of homologs : NCBIROPN1B [Mapview hg19]  ROPN1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF231410 AK302014 BC015413 BC140022 BC141849
RefSeq transcript (Entrez)NM_001012337 NM_001308313
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ROPN1B
Cluster EST : UnigeneHs.663128 [ NCBI ]
CGAP (NCI)Hs.663128
Alternative Splicing GalleryENSG00000114547
Gene ExpressionROPN1B [ NCBI-GEO ]   ROPN1B [ EBI - ARRAY_EXPRESS ]   ROPN1B [ SEEK ]   ROPN1B [ MEM ]
Gene Expression Viewer (FireBrowse)ROPN1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152015
GTEX Portal (Tissue expression)ROPN1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZX4
Splice isoforms : SwissVarQ9BZX4
PhosPhoSitePlusQ9BZX4
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ROPN1B
DMDM Disease mutations152015
Blocks (Seattle)ROPN1B
SuperfamilyQ9BZX4
Human Protein AtlasENSG00000114547
Peptide AtlasQ9BZX4
HPRD17985
IPIIPI00793555   IPI00966141   IPI00966430   IPI00967866   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZX4
IntAct (EBI)Q9BZX4
FunCoupENSG00000114547
BioGRIDROPN1B
STRING (EMBL)ROPN1B
ZODIACROPN1B
Ontologies - Pathways
QuickGOQ9BZX4
Ontology : AmiGOcytokinesis  protein binding  cytoplasm  Rho protein signal transduction  spermatogenesis  acrosome reaction  fusion of sperm to egg plasma membrane  single organismal cell-cell adhesion  receptor signaling complex scaffold activity  flagellated sperm motility  motile cilium  protein homodimerization activity  protein heterodimerization activity  
Ontology : EGO-EBIcytokinesis  protein binding  cytoplasm  Rho protein signal transduction  spermatogenesis  acrosome reaction  fusion of sperm to egg plasma membrane  single organismal cell-cell adhesion  receptor signaling complex scaffold activity  flagellated sperm motility  motile cilium  protein homodimerization activity  protein heterodimerization activity  
NDEx NetworkROPN1B
Atlas of Cancer Signalling NetworkROPN1B
Wikipedia pathwaysROPN1B
Orthology - Evolution
OrthoDB152015
GeneTree (enSembl)ENSG00000114547
Phylogenetic Trees/Animal Genes : TreeFamROPN1B
HOVERGENQ9BZX4
HOGENOMQ9BZX4
Homologs : HomoloGeneROPN1B
Homology/Alignments : Family Browser (UCSC)ROPN1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerROPN1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ROPN1B
dbVarROPN1B
ClinVarROPN1B
1000_GenomesROPN1B 
Exome Variant ServerROPN1B
ExAC (Exome Aggregation Consortium)ROPN1B (select the gene name)
Genetic variants : HAPMAP152015
Genomic Variants (DGV)ROPN1B [DGVbeta]
DECIPHERROPN1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisROPN1B 
Mutations
ICGC Data PortalROPN1B 
TCGA Data PortalROPN1B 
Broad Tumor PortalROPN1B
OASIS PortalROPN1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICROPN1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDROPN1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ROPN1B
DgiDB (Drug Gene Interaction Database)ROPN1B
DoCM (Curated mutations)ROPN1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ROPN1B (select a term)
intoGenROPN1B
Cancer3DROPN1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenROPN1B
Genetic Testing Registry ROPN1B
NextProtQ9BZX4 [Medical]
TSGene152015
GENETestsROPN1B
Target ValidationROPN1B
Huge Navigator ROPN1B [HugePedia]
snp3D : Map Gene to Disease152015
BioCentury BCIQROPN1B
ClinGenROPN1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152015
Chemical/Pharm GKB GenePA142671053
Clinical trialROPN1B
Miscellaneous
canSAR (ICR)ROPN1B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineROPN1B
EVEXROPN1B
GoPubMedROPN1B
iHOPROPN1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:42 CEST 2017

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