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ROPN1L (rhophilin associated tail protein 1-like)

Identity

Alias_namesropporin 1-like
rhophilin associated tail protein 1-like
Alias_symbol (synonym)ASP
FLJ25776
RSPH11
Other alias
HGNC (Hugo) ROPN1L
LocusID (NCBI) 83853
Atlas_Id 715
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 10441974 and ends at 10465138 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MARCH6 (5p15.2) / ROPN1L (5p15.2)ROPN1L (5p15.2) / SEMA5A (5p15.31)SEMA5A (5p15.31) / ROPN1L (5p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)ROPN1L   24060
Cards
Entrez_Gene (NCBI)ROPN1L  83853  rhophilin associated tail protein 1-like
AliasesASP; RSPH11
GeneCards (Weizmann)ROPN1L
Ensembl hg19 (Hinxton)ENSG00000145491 [Gene_View]  chr5:10441974-10465138 [Contig_View]  ROPN1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000145491 [Gene_View]  chr5:10441974-10465138 [Contig_View]  ROPN1L [Vega]
ICGC DataPortalENSG00000145491
TCGA cBioPortalROPN1L
AceView (NCBI)ROPN1L
Genatlas (Paris)ROPN1L
WikiGenes83853
SOURCE (Princeton)ROPN1L
Genetics Home Reference (NIH)ROPN1L
Genomic and cartography
GoldenPath hg19 (UCSC)ROPN1L  -     chr5:10441974-10465138 +  5p15.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ROPN1L  -     5p15.2   [Description]    (hg38-Dec_2013)
EnsemblROPN1L - 5p15.2 [CytoView hg19]  ROPN1L - 5p15.2 [CytoView hg38]
Mapping of homologs : NCBIROPN1L [Mapview hg19]  ROPN1L [Mapview hg38]
OMIM611756   
Gene and transcription
Genbank (Entrez)AF239723 AK026656 AK098642 BC014607 BM975707
RefSeq transcript (Entrez)NM_001201466 NM_031916
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)ROPN1L
Cluster EST : UnigeneHs.381089 [ NCBI ]
CGAP (NCI)Hs.381089
Alternative Splicing GalleryENSG00000145491
Gene ExpressionROPN1L [ NCBI-GEO ]   ROPN1L [ EBI - ARRAY_EXPRESS ]   ROPN1L [ SEEK ]   ROPN1L [ MEM ]
Gene Expression Viewer (FireBrowse)ROPN1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83853
GTEX Portal (Tissue expression)ROPN1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C74
Splice isoforms : SwissVarQ96C74
PhosPhoSitePlusQ96C74
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ROPN1L
DMDM Disease mutations83853
Blocks (Seattle)ROPN1L
SuperfamilyQ96C74
Human Protein AtlasENSG00000145491
Peptide AtlasQ96C74
HPRD17986
IPIIPI00303831   IPI00386160   
Protein Interaction databases
DIP (DOE-UCLA)Q96C74
IntAct (EBI)Q96C74
FunCoupENSG00000145491
BioGRIDROPN1L
STRING (EMBL)ROPN1L
ZODIACROPN1L
Ontologies - Pathways
QuickGOQ96C74
Ontology : AmiGOepithelial cilium movement  protein binding  cytoplasm  motile cilium  
Ontology : EGO-EBIepithelial cilium movement  protein binding  cytoplasm  motile cilium  
NDEx NetworkROPN1L
Atlas of Cancer Signalling NetworkROPN1L
Wikipedia pathwaysROPN1L
Orthology - Evolution
OrthoDB83853
GeneTree (enSembl)ENSG00000145491
Phylogenetic Trees/Animal Genes : TreeFamROPN1L
HOVERGENQ96C74
HOGENOMQ96C74
Homologs : HomoloGeneROPN1L
Homology/Alignments : Family Browser (UCSC)ROPN1L
Gene fusions - Rearrangements
Fusion : MitelmanROPN1L/SEMA5A [5p15.2/5p15.31]  
Fusion : MitelmanSEMA5A/ROPN1L [5p15.31/5p15.2]  [t(5;5)(p15;p15)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerROPN1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ROPN1L
dbVarROPN1L
ClinVarROPN1L
1000_GenomesROPN1L 
Exome Variant ServerROPN1L
ExAC (Exome Aggregation Consortium)ROPN1L (select the gene name)
Genetic variants : HAPMAP83853
Genomic Variants (DGV)ROPN1L [DGVbeta]
DECIPHER (Syndromes)5:10441974-10465138  ENSG00000145491
CONAN: Copy Number AnalysisROPN1L 
Mutations
ICGC Data PortalROPN1L 
TCGA Data PortalROPN1L 
Broad Tumor PortalROPN1L
OASIS PortalROPN1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICROPN1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDROPN1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ROPN1L
DgiDB (Drug Gene Interaction Database)ROPN1L
DoCM (Curated mutations)ROPN1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ROPN1L (select a term)
intoGenROPN1L
Cancer3DROPN1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611756   
Orphanet
MedgenROPN1L
Genetic Testing Registry ROPN1L
NextProtQ96C74 [Medical]
TSGene83853
GENETestsROPN1L
Huge Navigator ROPN1L [HugePedia]
snp3D : Map Gene to Disease83853
BioCentury BCIQROPN1L
ClinGenROPN1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83853
Chemical/Pharm GKB GenePA134956127
Clinical trialROPN1L
Miscellaneous
canSAR (ICR)ROPN1L (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineROPN1L
EVEXROPN1L
GoPubMedROPN1L
iHOPROPN1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:30 CET 2017

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